Os11g0663400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0663400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.67 | 0.529 | 6.23 | 0.82 | 0.76 | -2.72 | -0.215 | 0.271 | 0.742 | 17.5 | 0.569 | 473 | -- | -- |
| 126.69 | 0.524 | 6.24 | 0.785 | 0.754 | -2.7 | -0.2 | -- | 0.742 | 17.6 | 14.99 | 477 | -- | -- |
| 126.77 | 0.524 | 6.23 | 0.796 | 0.762 | -2.73 | -- | 0.109 | 0.735 | 17.5 | -4.443 | 472 | -- | -- |
| 126.46 | 0.524 | 6.24 | 0.766 | 0.767 | -2.48 | -- | -- | 0.73 | 17.6 | 16.59 | 484 | -- | -- |
| 134.6 | 0.54 | 6.2 | 1.07 | -- | -1.97 | -- | 0.644 | 0.768 | -- | 0.6542 | 2384 | -- | -- |
| 211.07 | 0.681 | 6.31 | 0.161 | 0.179 | -- | 0.0691 | -- | 0.325 | 12.1 | -- | -- | -- | -- |
| 211.08 | 0.68 | 6.31 | 0.164 | 0.18 | -- | -- | -- | 0.326 | 12.3 | -- | -- | -- | -- |
| 134.99 | 0.541 | 6.22 | 0.906 | -- | -1.96 | -- | -- | 0.725 | -- | 10.58 | 2354 | -- | -- |
| 140.12 | 0.551 | 6.27 | -- | 0.698 | -2.09 | -- | -- | 0.605 | 17.4 | 17.62 | 462 | -- | -- |
| 213.11 | 0.682 | 6.31 | 0.158 | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
| 211.79 | 0.681 | 6.31 | -- | 0.177 | -- | -- | -- | 0.307 | 12.3 | -- | -- | -- | -- |
| 150.36 | 0.571 | 6.26 | -- | -- | -1.41 | -- | -- | 0.564 | -- | 19.72 | 1177 | -- | -- |
| 213.76 | 0.682 | 6.32 | -- | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 2 | 127.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 3 | 127.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 5 | 128.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 7 | 128.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 17 | 129.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 24 | 129.31 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 51 | 129.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 53 | 129.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 77 | 130.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 91 | 130.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 102 | 130.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 107 | 130.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 127 | 131.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 192 | 131.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 198 | 131.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 199 | 131.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 214 | 132.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 221 | 132.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 230 | 132.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 240 | 132.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 242 | 132.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 251 | 132.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 266 | 132.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 4 |
| 277 | 132.46 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 286 | 132.48 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 288 | 132.49 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 290 | 132.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 301 | 132.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 368 | 132.81 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 414 | 132.98 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 460 | 133.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 470 | 133.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 501 | 133.25 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 532 | 133.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 537 | 133.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 569 | 133.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 642 | 133.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 713 | 133.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 793 | 133.92 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 813 | 133.96 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 826 | 133.99 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 923 | 134.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 969 | 134.26 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |