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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0661900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0404) R2 : 0.22
β1 : -1.2 (0.151) R2dD : 0.12 R2D : 0.0347
β2 : 0.765 (0.0993) R2dC : 0.107 R2C : 0.0458
β3 : 0.883 (0.125) R2dE : 0.0988 R2E : -0.0248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.406 (0.089) R2dN8 : 0.0505 R2N8 : -0.02
σ : 0.748
deviance : 258.12
__
_____
C
peak time of C : 1.92
E
wheather : temperature
threshold : 20.5
memory length : 214
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.65 0.75 4.18 -1.35 0.785 0.749 -0.453 -0.998 -0.417 1.64 20.5 96 -- --
258.81 0.749 4.16 -1.16 0.801 0.815 0.012 -- -0.373 1.65 20.55 95 -- --
254.52 0.743 4.18 -1.36 0.754 0.799 -- -0.911 -0.424 1.85 20.54 210 -- --
258.12 0.748 4.17 -1.2 0.765 0.883 -- -- -0.406 1.92 20.5 214 -- --
284.05 0.785 4.19 -1.41 -- 0.696 -- -1.14 -0.426 -- 20.51 585 -- --
285.64 0.792 4.12 -0.936 0.61 -- -0.0128 -- -0.217 1.73 -- -- -- --
285.64 0.791 4.12 -0.936 0.61 -- -- -- -0.217 1.73 -- -- -- --
288.02 0.79 4.16 -1.21 -- 0.82 -- -- -0.399 -- 20.6 594 -- --
292.94 0.797 4.13 -- 0.733 0.634 -- -- -0.215 1.5 20.4 130 -- --
308.26 0.82 4.12 -0.911 -- -- -- -- -0.203 -- -- -- -- --
308.71 0.822 4.1 -- 0.593 -- -- -- -0.113 1.68 -- -- -- --
321.4 0.835 4.12 -- -- 0.474 -- -- -0.19 -- 20.5 276 -- --
330.13 0.848 4.09 -- -- -- -- -- -0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.80 precipitation 0.1 270 > th dose independent rect. 2 2
2 248.98 precipitation 0.1 270 > th dose dependent rect. 2 2
3 251.07 radiation 1.0 1440 < th dose independent rect. 14 1
4 251.07 radiation 1.0 1440 < th dose dependent rect. 14 1
5 251.38 radiation 1.0 1440 < th dose independent rect. 11 1
6 251.38 radiation 1.0 1440 < th dose dependent rect. 11 1
7 251.63 temperature 20.0 10 > th dose independent rect. 14 16
8 251.74 humidity 90.0 30 > th dose dependent rect. 24 6
10 251.78 radiation 1.0 1440 > th dose independent rect. 14 1
13 252.55 radiation 1.0 720 > th dose dependent rect. 18 11
15 252.78 precipitation 0.1 270 > th dose independent rect. 23 5
18 253.01 humidity 90.0 30 > th dose dependent rect. 24 10
24 253.11 precipitation 0.1 270 > th dose dependent rect. 23 5
25 253.13 wind 1.0 720 < th dose independent rect. 23 2
26 253.30 temperature 20.0 90 > th dose independent rect. 14 16
27 253.30 temperature 20.0 270 > th dose independent rect. 11 19
39 253.77 wind 1.0 1440 > th dose independent rect. 23 2
53 254.29 temperature 20.0 90 > th dose independent rect. 11 22
67 255.11 radiation 20.0 4320 < th dose independent rect. 16 15
85 255.48 radiation 1.0 720 > th dose independent rect. 18 11
91 255.59 humidity 70.0 14400 < th dose dependent rect. 21 10
92 255.65 radiation 1.0 1440 > th dose independent rect. 11 4
96 255.74 radiation 20.0 4320 < th dose independent rect. 16 4
99 255.75 radiation 20.0 4320 < th dose independent rect. 16 7
110 255.80 temperature 20.0 270 < th dose independent rect. 15 17
116 255.81 radiation 20.0 4320 < th dose independent rect. 16 11
128 255.90 temperature 20.0 270 < th dose independent rect. 11 21
131 255.93 humidity 90.0 270 > th dose dependent rect. 1 1
134 256.04 temperature 20.0 270 > th dose independent rect. 21 9
136 256.10 temperature 20.0 270 > th dose independent sin 12 NA
145 256.24 humidity 60.0 43200 < th dose dependent rect. 7 1
151 256.40 temperature 20.0 90 < th dose independent rect. 14 21
156 256.45 temperature 20.0 10 > th dose independent sin 10 NA
158 256.49 radiation 1.0 1440 > th dose dependent rect. 18 1
170 256.55 humidity 70.0 14400 > th dose independent rect. 21 10
171 256.57 humidity 90.0 30 > th dose dependent sin 6 NA
176 256.60 radiation 1.0 1440 < th dose independent rect. 10 5
179 256.60 radiation 1.0 1440 < th dose dependent rect. 10 5
181 256.61 temperature 20.0 90 > th dose independent rect. 7 23
189 256.71 temperature 20.0 270 < th dose independent sin 12 NA
207 256.88 temperature 20.0 90 < th dose independent rect. 18 17
226 257.01 humidity 90.0 30 > th dose dependent rect. 24 22
238 257.12 humidity 50.0 43200 < th dose independent rect. 7 2
254 257.26 humidity 70.0 14400 < th dose independent rect. 21 10
277 257.45 humidity 90.0 270 > th dose dependent rect. 20 10
292 257.57 radiation 10.0 4320 > th dose dependent rect. 17 13
299 257.64 wind 1.0 270 < th dose dependent rect. 24 1
302 257.65 temperature 20.0 10 < th dose independent rect. 15 19
303 257.65 temperature 20.0 270 > th dose independent rect. 20 23
311 257.72 radiation 30.0 4320 < th dose independent rect. 15 17
327 257.83 temperature 20.0 10 < th dose independent rect. 15 16
344 257.94 temperature 20.0 10 < th dose independent rect. 18 16
346 257.98 temperature 20.0 10 < th dose independent sin 11 NA
352 258.00 temperature 20.0 10 < th dose independent rect. 18 13
368 258.06 temperature 20.0 90 < th dose independent rect. 3 23
377 258.10 atmosphere 995.0 43200 < th dose dependent rect. 12 11
392 258.19 temperature 20.0 90 > th dose independent no NA NA
396 258.20 wind 9.0 43200 > th dose independent rect. 20 18
397 258.20 temperature 20.0 30 > th dose independent rect. 14 19
398 258.20 temperature 20.0 90 < th dose independent rect. 18 23
417 258.24 atmosphere 1000.0 30 > th dose dependent rect. 9 23
433 258.34 temperature 20.0 90 < th dose independent rect. 21 23
445 258.39 humidity 50.0 43200 > th dose independent rect. 7 1
447 258.39 atmosphere 995.0 43200 < th dose dependent rect. 9 15
456 258.43 temperature 20.0 10 > th dose independent rect. 11 23
463 258.45 atmosphere 995.0 43200 < th dose dependent sin 20 NA
465 258.49 wind 9.0 43200 < th dose independent rect. 20 18
485 258.60 wind 9.0 43200 > th dose dependent rect. 9 9
486 258.62 wind 9.0 43200 > th dose dependent rect. 20 22
489 258.63 wind 9.0 43200 > th dose dependent rect. 9 23
494 258.66 radiation 10.0 4320 > th dose dependent rect. 16 15
504 258.69 atmosphere 1005.0 30 < th dose dependent sin 7 NA
507 258.71 wind 9.0 43200 > th dose independent sin 6 NA
508 258.71 temperature 20.0 720 < th dose independent rect. 21 3
509 258.71 wind 9.0 43200 > th dose independent rect. 4 10
510 258.71 wind 9.0 43200 > th dose dependent rect. 9 13
514 258.73 radiation 10.0 1440 < th dose dependent rect. 18 2
522 258.75 wind 9.0 43200 > th dose dependent rect. 9 15
523 258.76 wind 9.0 43200 > th dose independent rect. 6 8
525 258.76 wind 9.0 43200 < th dose independent rect. 5 9
529 258.76 wind 9.0 43200 > th dose dependent rect. 9 6
530 258.76 wind 9.0 43200 > th dose dependent rect. 9 17
533 258.77 wind 9.0 43200 < th dose independent sin 6 NA
539 258.77 wind 9.0 43200 > th dose dependent rect. 20 20
542 258.79 temperature 20.0 90 < th dose independent no NA NA
544 258.79 wind 9.0 43200 > th dose independent rect. 1 13
555 258.82 wind 9.0 43200 < th dose independent rect. 1 13
556 258.82 wind 7.0 43200 > th dose dependent rect. 6 8
559 258.83 wind 9.0 43200 < th dose independent rect. 23 15
577 258.87 radiation 1.0 720 > th dose independent rect. 18 1
597 258.89 wind 9.0 43200 > th dose dependent rect. 17 23
605 258.91 wind 9.0 43200 > th dose dependent sin 22 NA
613 258.93 wind 9.0 43200 > th dose dependent rect. 1 21
620 258.94 wind 9.0 43200 > th dose dependent rect. 4 18
644 258.98 wind 7.0 43200 > th dose dependent rect. 4 10
649 258.98 atmosphere 1000.0 10 > th dose dependent rect. 19 23
652 258.99 wind 9.0 43200 > th dose dependent no NA NA
675 259.01 wind 9.0 43200 > th dose dependent rect. 10 4
682 259.02 atmosphere 1005.0 720 > th dose independent rect. 19 7
710 259.07 wind 9.0 43200 > th dose dependent rect. 13 23
744 259.12 humidity 90.0 270 > th dose dependent sin 11 NA
750 259.13 wind 9.0 43200 > th dose dependent rect. 3 15
765 259.15 humidity 90.0 270 > th dose dependent rect. 15 15
773 259.16 wind 7.0 43200 > th dose dependent rect. 23 15
778 259.18 humidity 90.0 270 > th dose dependent rect. 12 18
783 259.20 atmosphere 995.0 43200 < th dose independent rect. 10 13
794 259.22 radiation 40.0 4320 < th dose dependent rect. 17 1
800 259.24 wind 9.0 43200 > th dose independent rect. 9 3
801 259.24 atmosphere 995.0 43200 < th dose independent rect. 5 10
825 259.29 atmosphere 995.0 43200 < th dose dependent rect. 14 8
830 259.30 wind 7.0 43200 > th dose dependent sin 6 NA
857 259.38 atmosphere 995.0 43200 < th dose independent sin 20 NA
859 259.38 atmosphere 995.0 43200 > th dose independent rect. 9 14
861 259.38 atmosphere 995.0 43200 < th dose dependent rect. 4 15
880 259.42 temperature 20.0 10 < th dose independent rect. 12 22
890 259.44 temperature 20.0 10 > th dose independent rect. 8 23
896 259.46 atmosphere 1005.0 720 > th dose independent rect. 20 5
897 259.46 atmosphere 1005.0 720 < th dose independent rect. 20 5
909 259.48 atmosphere 995.0 43200 < th dose independent rect. 7 17
938 259.55 temperature 20.0 10 > th dose independent no NA NA
939 259.55 atmosphere 995.0 43200 > th dose independent sin 20 NA
941 259.55 radiation 40.0 14400 < th dose independent rect. 15 14
951 259.57 atmosphere 995.0 43200 > th dose independent rect. 6 17
980 259.61 atmosphere 995.0 43200 > th dose independent rect. 5 10
994 259.62 wind 9.0 43200 < th dose independent rect. 9 3