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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0661800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0456) R2 : 0.153
β1 : 1.32 (0.167) R2dD : 0.12 R2D : 0.0665
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.575 (0.0973) R2dN8 : 0.0867 R2N8 : 0.033
σ : 0.856
deviance : 335.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.07 0.818 3.72 1.2 0.233 1.54 1.16 1.39 0.616 23.1 0.1144 525 -- --
303.13 0.811 3.73 1.19 0.228 1.92 1.14 -- 0.622 23.1 0.1252 524 -- --
308.67 0.818 3.72 1.16 0.22 1.71 -- 1.54 0.611 23.4 0.09195 516 -- --
308.57 0.818 3.73 1.11 0.21 2.08 -- -- 0.626 23.6 0.1326 524 -- --
311.53 0.822 3.72 1.13 -- 1.87 -- 1.32 0.624 -- 0.2252 524 -- --
320.11 0.839 3.74 1.37 0.306 -- 1.5 -- 0.578 23.1 -- -- -- --
329.67 0.85 3.75 1.31 0.298 -- -- -- 0.572 23.2 -- -- -- --
311.51 0.822 3.73 1.12 -- 2.26 -- -- 0.62 -- 0.2495 517 -- --
339.78 0.859 3.75 -- 0.194 2.74 -- -- 0.528 0.125 0.1635 524 -- --
335.25 0.856 3.74 1.32 -- -- -- -- 0.575 -- -- -- -- --
375.05 0.906 3.78 -- 0.312 -- -- -- 0.426 23.5 -- -- -- --
342.48 0.862 3.75 -- -- 2.76 -- -- 0.518 -- 0.06377 524 -- --
381.17 0.911 3.77 -- -- -- -- -- 0.428 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 297.27 radiation 30.0 1440 < th dose independent rect. 17 14
2 298.09 humidity 70.0 90 < th dose dependent rect. 19 14
4 298.83 humidity 70.0 90 < th dose independent rect. 18 15
5 298.90 humidity 70.0 10 < th dose independent rect. 15 19
7 299.81 precipitation 0.1 720 < th dose independent rect. 3 16
8 299.81 precipitation 0.1 720 < th dose dependent rect. 3 16
9 300.10 precipitation 0.1 720 > th dose dependent rect. 22 20
11 300.17 humidity 70.0 10 < th dose independent sin 11 NA
12 300.42 precipitation 0.1 720 > th dose independent rect. 4 14
22 300.92 humidity 80.0 720 < th dose independent rect. 3 4
25 300.99 radiation 30.0 1440 < th dose independent rect. 21 10
27 301.00 precipitation 0.1 43200 > th dose independent rect. 17 1
28 301.02 humidity 80.0 720 < th dose dependent rect. 3 4
29 301.03 precipitation 0.1 720 > th dose dependent rect. 4 14
35 301.13 precipitation 0.1 43200 < th dose independent rect. 17 1
36 301.13 precipitation 0.1 43200 < th dose dependent rect. 17 1
42 301.26 humidity 70.0 90 < th dose dependent rect. 6 3
53 301.27 humidity 70.0 1440 > th dose independent rect. 21 10
64 301.42 humidity 70.0 10 < th dose dependent sin 11 NA
67 301.44 humidity 90.0 720 < th dose dependent rect. 6 1
71 301.49 precipitation 0.1 720 > th dose independent rect. 23 19
73 301.52 radiation 10.0 43200 > th dose independent rect. 9 2
87 301.70 radiation 10.0 43200 < th dose dependent rect. 9 1
92 301.79 humidity 70.0 1440 > th dose independent rect. 3 4
98 301.86 humidity 70.0 1440 > th dose independent rect. 5 2
107 302.01 precipitation 0.1 43200 > th dose dependent rect. 17 1
108 302.01 precipitation 0.1 14400 > th dose dependent rect. 13 5
109 302.04 humidity 80.0 720 < th dose independent rect. 24 8
123 302.19 humidity 70.0 90 < th dose independent rect. 7 2
124 302.20 radiation 30.0 1440 < th dose independent rect. 6 1
128 302.24 humidity 80.0 720 < th dose dependent rect. 21 11
149 302.41 humidity 70.0 10 < th dose independent rect. 7 3
164 302.43 precipitation 0.1 1440 < th dose independent rect. 5 13
166 302.43 precipitation 0.1 1440 < th dose dependent rect. 5 13
169 302.45 precipitation 0.1 14400 > th dose dependent rect. 5 13
179 302.54 precipitation 0.1 720 > th dose independent rect. 14 4
209 302.59 precipitation 0.1 720 > th dose dependent sin 1 NA
214 302.60 precipitation 0.1 14400 > th dose dependent rect. 1 17
215 302.61 humidity 70.0 1440 > th dose independent rect. 1 6
221 302.64 precipitation 0.1 720 > th dose independent rect. 16 2
235 302.74 radiation 1.0 720 < th dose dependent rect. 7 19
239 302.76 precipitation 0.1 14400 > th dose dependent rect. 15 3
244 302.81 radiation 30.0 1440 < th dose independent rect. 3 4
260 302.88 radiation 10.0 43200 < th dose dependent rect. 7 1
269 302.93 temperature 25.0 720 > th dose independent rect. 17 2
276 302.97 radiation 40.0 10 < th dose independent sin 12 NA
277 302.97 temperature 20.0 720 > th dose dependent rect. 17 2
289 303.02 humidity 80.0 10 < th dose dependent rect. 3 7
292 303.03 radiation 10.0 43200 < th dose independent rect. 7 1
295 303.03 precipitation 0.1 720 > th dose dependent rect. 13 6
300 303.04 radiation 10.0 43200 < th dose independent rect. 9 2
305 303.05 humidity 70.0 10 < th dose dependent rect. 16 18
310 303.07 radiation 20.0 270 > th dose dependent rect. 6 1
332 303.11 humidity 80.0 10 < th dose dependent rect. 23 11
385 303.23 humidity 90.0 720 < th dose independent rect. 17 2
396 303.28 radiation 20.0 270 > th dose independent rect. 6 1
423 303.30 radiation 10.0 43200 < th dose independent rect. 12 1
434 303.33 temperature 20.0 1440 > th dose independent rect. 4 1
436 303.34 radiation 10.0 43200 < th dose independent rect. 7 4
443 303.36 precipitation 0.1 720 < th dose independent rect. 7 23
445 303.36 precipitation 0.1 720 < th dose dependent rect. 7 23
446 303.37 wind 3.0 14400 < th dose dependent rect. 10 1
450 303.38 temperature 20.0 1440 > th dose dependent rect. 2 3
454 303.40 temperature 20.0 1440 < th dose independent rect. 4 1
460 303.42 radiation 1.0 720 < th dose dependent rect. 17 1
473 303.48 temperature 20.0 10 < th dose independent rect. 19 1
496 303.53 radiation 10.0 43200 < th dose independent rect. 7 6
528 303.56 precipitation 0.1 720 > th dose dependent rect. 16 2
570 303.63 precipitation 0.1 1440 < th dose independent rect. 13 5
573 303.63 precipitation 0.1 1440 < th dose dependent rect. 13 5
585 303.65 precipitation 0.1 14400 > th dose dependent rect. 17 10
618 303.78 precipitation 0.1 14400 > th dose independent rect. 13 5
621 303.80 humidity 90.0 270 > th dose independent rect. 17 1
630 303.82 radiation 10.0 43200 < th dose independent rect. 21 16
631 303.82 radiation 10.0 43200 < th dose independent rect. 19 18
645 303.84 precipitation 0.1 14400 < th dose independent rect. 13 5
647 303.84 radiation 40.0 43200 > th dose dependent rect. 11 1
649 303.84 precipitation 0.1 14400 < th dose dependent rect. 13 5
657 303.86 radiation 10.0 43200 < th dose dependent rect. 22 10
659 303.86 radiation 10.0 43200 < th dose dependent rect. 19 13
668 303.87 radiation 10.0 43200 < th dose dependent rect. 1 7
684 303.89 radiation 1.0 720 < th dose dependent rect. 17 9
745 303.96 radiation 10.0 43200 > th dose dependent rect. 11 1
763 303.98 radiation 1.0 720 < th dose dependent rect. 7 11
838 304.04 temperature 20.0 10 < th dose dependent rect. 20 1
853 304.06 radiation 1.0 43200 > th dose dependent rect. 6 2
856 304.06 radiation 1.0 720 < th dose dependent rect. 9 17
858 304.07 wind 1.0 1440 > th dose independent rect. 10 1
874 304.10 precipitation 0.1 1440 > th dose independent rect. 16 9
903 304.12 precipitation 0.1 14400 > th dose dependent rect. 16 8
914 304.14 radiation 1.0 43200 > th dose dependent rect. 6 6
931 304.15 precipitation 0.1 720 < th dose independent rect. 16 23
932 304.15 precipitation 0.1 14400 > th dose dependent sin 19 NA
961 304.15 precipitation 0.1 720 < th dose dependent rect. 16 23
991 304.19 humidity 70.0 10 > th dose independent sin 11 NA