Os11g0660500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Translationally controlled tumor protein (Fragment).
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Os11g0660500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Translationally controlled tumor protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.63 | 0.276 | 15.5 | 0.126 | 0.462 | -0.948 | 0.564 | 0.558 | -0.273 | 21.9 | 19.7 | 4617 | -- | -- |
| 34.56 | 0.274 | 15.5 | 0.191 | 0.496 | -1.1 | 0.558 | -- | -0.233 | 21.8 | 18.9 | 4562 | -- | -- |
| 35.73 | 0.278 | 15.5 | 0.0884 | 0.464 | -0.96 | -- | 0.575 | -0.28 | 21.6 | 19.5 | 4610 | -- | -- |
| 35.48 | 0.277 | 15.5 | 0.125 | 0.463 | -1.17 | -- | -- | -0.262 | 21.7 | 18.9 | 4638 | -- | -- |
| 47.69 | 0.322 | 15.5 | 0.16 | -- | -1.1 | -- | 0.224 | -0.259 | -- | 19.44 | 3597 | -- | -- |
| 53 | 0.341 | 15.5 | 0.847 | 0.461 | -- | 0.646 | -- | 0.0159 | 22 | -- | -- | -- | -- |
| 54.55 | 0.346 | 15.5 | 0.824 | 0.463 | -- | -- | -- | 0.0156 | 21.7 | -- | -- | -- | -- |
| 47.76 | 0.322 | 15.5 | 0.211 | -- | -1.13 | -- | -- | -0.244 | -- | 19.4 | 3604 | -- | -- |
| 35.87 | 0.279 | 15.5 | -- | 0.482 | -1.21 | -- | -- | -0.272 | 21.5 | 18.9 | 4636 | -- | -- |
| 67.27 | 0.383 | 15.4 | 0.828 | -- | -- | -- | -- | 0.0149 | -- | -- | -- | -- | -- |
| 72.44 | 0.398 | 15.5 | -- | 0.465 | -- | -- | -- | -0.0761 | 21.8 | -- | -- | -- | -- |
| 48.08 | 0.323 | 15.5 | -- | -- | -1.28 | -- | -- | -0.286 | -- | 18.93 | 4911 | -- | -- |
| 85.35 | 0.431 | 15.5 | -- | -- | -- | -- | -- | -0.0769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 12 | 34.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 13 |
| 13 | 34.70 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 44 | 34.89 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 70 | 34.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 79 | 35.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 130 | 35.25 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 139 | 35.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 22 |
| 159 | 35.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 167 | 35.35 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 176 | 35.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 182 | 35.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 198 | 35.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 203 | 35.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 22 |
| 213 | 35.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 235 | 35.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 242 | 35.48 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 256 | 35.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 263 | 35.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 280 | 35.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 361 | 35.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 382 | 35.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 435 | 35.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 439 | 35.84 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 466 | 35.89 | humidity | 70 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 483 | 35.92 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 511 | 35.95 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 588 | 36.04 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 605 | 36.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 622 | 36.06 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 679 | 36.12 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 720 | 36.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 775 | 36.19 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 798 | 36.21 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 817 | 36.22 | temperature | 20 | 4320 | < th | dose dependent | sin | 12 | NA |
| 862 | 36.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 863 | 36.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 866 | 36.25 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 911 | 36.28 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 913 | 36.28 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 928 | 36.29 | humidity | 60 | 43200 | > th | dose independent | sin | 9 | NA |
| 943 | 36.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 945 | 36.30 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 964 | 36.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 974 | 36.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 999 | 36.32 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |