FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0658700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor, MADS-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0297) R2 : 0.298
β1 : -0.217 (0.116) R2dD : 0.00658 R2D : -0.0245
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.78 (0.302) R2dE : 0.0244 R2E : -0.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -30.5 (2.81) R2dD*E : 0.448 R2D*E : 0.267
γ1 : -0.0102 (0.0643) R2dN8 : 5.52e-05 R2N8 : -0.00493
σ : 0.549
deviance : 137.68
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.44
memory length : 31
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.05
open length of G : 0.996

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137.07 0.55 2.93 -0.212 0.00957 -0.776 0.496 -30.3 -0.0112 17.5 20.38 31 2.02 0.997
172.13 0.616 2.97 0.267 0.013 1.64 0.678 -- -0.0166 17 20.38 31 2.02 0.997
137.55 0.55 2.93 -0.216 0.0457 -0.76 -- -30.5 -0.011 12.6 20.44 31 2.05 0.996
173.2 0.617 2.97 0.269 0.0451 1.67 -- -- -0.0159 12.5 20.38 31 2.02 0.997
137.68 0.549 2.93 -0.217 -- -0.78 -- -30.5 -0.0102 -- 20.44 31 2.05 0.996
191.26 0.648 2.94 0.264 0.0883 -- -0.852 -- 0.106 4.78 -- -- -- --
193.16 0.651 2.94 0.268 0.0826 -- -- -- 0.11 4.46 -- -- -- --
173.32 0.616 2.97 0.268 -- 1.65 -- -- -0.0151 -- 20.38 31 2.02 0.997
175.11 0.62 2.98 -- 0.0411 1.67 -- -- -0.0458 12.2 20 31 2.09 1.04
193.52 0.65 2.94 0.271 -- -- -- -- 0.112 -- -- -- -- --
195.04 0.653 2.95 -- 0.0876 -- -- -- 0.0804 4.39 -- -- -- --
175.22 0.619 2.98 -- -- 1.66 -- -- -0.045 -- 20.34 30 2.18 1.06
195.46 0.653 2.95 -- -- -- -- -- 0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.16 temperature 20.0 30 > th dose dependent rect. 2 1
3 137.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 137.36 wind 3.0 30 < th dose dependent rect. 2 1
7 137.43 temperature 20.0 30 > th dose independent rect. 2 1
12 137.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
13 137.60 wind 3.0 30 < th dose independent rect. 2 1
16 137.77 humidity 80.0 30 > th dose independent rect. 2 1
18 137.81 temperature 10.0 30 > th dose independent rect. 2 1
20 137.81 temperature 30.0 30 < th dose independent rect. 2 1
21 137.81 humidity 50.0 30 > th dose independent rect. 2 1
24 137.81 atmosphere 995.0 30 > th dose independent rect. 2 1
25 137.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 137.81 radiation 1.0 30 < th dose independent rect. 2 1
32 137.81 precipitation 0.1 30 < th dose independent rect. 2 1
33 137.81 temperature 10.0 30 > th dose independent rect. 3 23
34 137.81 radiation 1.0 30 < th dose dependent rect. 2 1
39 137.81 precipitation 0.1 30 < th dose dependent rect. 2 1
40 137.82 humidity 50.0 30 > th dose dependent rect. 2 1
48 138.95 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 140.13 temperature 30.0 30 < th dose dependent rect. 2 1
59 142.03 wind 1.0 30 > th dose independent rect. 2 1
99 146.59 wind 9.0 30 < th dose independent rect. 3 23
101 149.31 radiation 10.0 43200 < th dose dependent rect. 3 1
105 149.55 wind 9.0 1440 < th dose independent rect. 3 1
106 149.55 temperature 10.0 1440 > th dose independent rect. 3 1
109 149.55 temperature 30.0 1440 < th dose independent rect. 3 1
113 149.55 humidity 50.0 1440 > th dose independent rect. 3 1
122 149.55 atmosphere 995.0 1440 > th dose independent rect. 3 1
123 149.55 radiation 1.0 1440 < th dose independent rect. 3 1
143 149.55 temperature 10.0 1440 > th dose independent rect. 4 23
146 149.55 radiation 1.0 1440 < th dose dependent rect. 3 1
162 151.48 atmosphere 995.0 30 > th dose independent rect. 3 23
166 153.81 precipitation 0.1 30 < th dose independent rect. 3 23
167 153.81 precipitation 0.1 30 < th dose dependent rect. 3 23
195 168.15 temperature 25.0 270 > th dose independent rect. 23 4
207 171.16 temperature 25.0 270 > th dose dependent rect. 23 4
211 171.51 temperature 25.0 270 > th dose dependent rect. 23 7
220 172.18 humidity 50.0 30 > th dose independent rect. 3 23
221 172.23 temperature 30.0 30 < th dose independent rect. 3 23
229 173.02 wind 1.0 30 < th dose independent rect. 24 3
242 174.01 humidity 50.0 90 < th dose dependent rect. 12 2
243 174.02 humidity 50.0 90 < th dose independent rect. 13 1
246 174.06 humidity 50.0 10 < th dose independent rect. 13 1
253 174.06 humidity 50.0 10 < th dose dependent rect. 13 1
474 174.89 humidity 50.0 10 < th dose independent rect. 13 5
589 175.86 atmosphere 1015.0 30 < th dose independent rect. 3 23
613 176.04 humidity 70.0 10 < th dose independent rect. 7 1
673 176.04 humidity 70.0 10 < th dose dependent rect. 7 1
751 176.11 atmosphere 1000.0 10 < th dose independent rect. 7 1
758 176.11 atmosphere 1000.0 10 < th dose dependent rect. 7 1
767 176.13 wind 1.0 10 < th dose dependent rect. 7 1
772 176.16 wind 1.0 10 < th dose independent rect. 7 1
788 176.44 wind 1.0 30 > th dose independent rect. 3 23
793 176.77 humidity 50.0 30 < th dose dependent sin 7 NA
849 177.32 wind 1.0 10 < th dose independent rect. 15 12
850 177.33 wind 1.0 10 < th dose independent rect. 17 10
854 177.34 wind 1.0 10 < th dose independent rect. 21 6
860 177.50 wind 1.0 10 < th dose independent rect. 12 15
880 178.28 wind 1.0 10 < th dose independent rect. 7 20
881 178.30 humidity 50.0 10 < th dose independent sin 13 NA
884 178.40 humidity 50.0 10 < th dose dependent sin 12 NA
886 178.55 humidity 50.0 10 > th dose independent sin 13 NA
890 178.63 wind 1.0 10 > th dose independent sin 16 NA
907 179.10 wind 1.0 10 > th dose independent sin 9 NA
938 179.65 humidity 90.0 90 < th dose independent rect. 2 1
942 179.71 wind 9.0 30 < th dose dependent rect. 3 23
951 179.94 temperature 10.0 30 > th dose dependent rect. 3 23
960 180.20 wind 1.0 10 > th dose independent no NA NA
989 180.55 wind 1.0 10 < th dose independent rect. 2 7