FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0657900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0281) R2 : 0.00754
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0591) R2dN8 : 0.00974 R2N8 : 0.00754
σ : 0.529
deviance : 128.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.27 0.475 3.51 0.306 0.447 1.67 -0.0719 -2.08 0.195 7.11 0.2099 970 -- --
101.97 0.47 3.49 0.355 0.454 1.14 -0.0331 -- 0.189 7.18 0.2465 848 -- --
101.92 0.47 3.51 0.311 0.452 1.67 -- -1.92 0.188 7.21 0.2157 850 -- --
101.97 0.47 3.49 0.354 0.451 1.15 -- -- 0.191 7.21 0.2397 850 -- --
112.67 0.494 3.52 0.321 -- 1.51 -- -1.43 0.201 -- 2.8e-05 850 -- --
110.88 0.494 3.5 0.497 0.452 -- -0.064 -- 0.157 6.87 -- -- -- --
110.89 0.493 3.5 0.496 0.451 -- -- -- 0.158 6.89 -- -- -- --
112.74 0.495 3.5 0.371 -- 1.17 -- -- 0.202 -- 0.1515 850 -- --
105.07 0.477 3.5 -- 0.457 1.31 -- -- 0.154 7.18 0.1657 850 -- --
121.58 0.515 3.51 0.506 -- -- -- -- 0.166 -- -- -- -- --
117.38 0.507 3.51 -- 0.457 -- -- -- 0.102 6.82 -- -- -- --
115.9 0.501 3.51 -- -- 1.28 -- -- 0.166 -- -1.049e-05 877 -- --
128.33 0.529 3.52 -- -- -- -- -- 0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.32 radiation 1.0 90 < th dose dependent rect. 5 12
2 100.87 radiation 1.0 90 < th dose independent rect. 5 12
3 101.07 radiation 1.0 90 < th dose dependent rect. 5 5
4 101.09 radiation 1.0 90 < th dose dependent rect. 5 3
7 101.11 radiation 1.0 90 < th dose independent rect. 5 5
8 101.13 radiation 1.0 90 < th dose independent rect. 5 3
12 101.17 radiation 1.0 90 < th dose independent rect. 5 8
13 101.17 radiation 1.0 90 < th dose independent rect. 5 10
19 101.23 temperature 30.0 30 < th dose dependent rect. 5 3
29 101.69 precipitation 0.1 270 > th dose independent rect. 1 17
42 102.19 precipitation 0.1 270 > th dose independent sin 2 NA
43 102.25 wind 9.0 4320 < th dose independent rect. 5 4
44 102.27 precipitation 0.1 270 < th dose independent sin 2 NA
45 102.27 precipitation 0.1 720 < th dose independent rect. 16 17
46 102.27 precipitation 0.1 270 < th dose dependent sin 2 NA
47 102.27 precipitation 0.1 720 < th dose dependent rect. 16 17
53 102.36 precipitation 0.1 270 > th dose dependent sin 3 NA
59 102.44 atmosphere 1010.0 30 < th dose independent rect. 5 3
61 102.47 wind 1.0 43200 < th dose independent rect. 24 2
63 102.59 precipitation 0.1 270 > th dose dependent rect. 2 17
68 102.64 wind 1.0 43200 > th dose independent rect. 24 2
72 102.69 precipitation 0.1 720 < th dose independent rect. 21 23
74 102.69 precipitation 0.1 720 < th dose dependent rect. 21 23
75 102.70 humidity 80.0 43200 < th dose independent rect. 22 11
78 102.71 humidity 80.0 43200 > th dose independent rect. 22 11
79 102.71 humidity 90.0 90 > th dose dependent rect. 5 16
81 102.73 temperature 10.0 1440 > th dose independent rect. 5 4
84 102.73 humidity 50.0 1440 > th dose independent rect. 5 4
86 102.73 atmosphere 995.0 1440 > th dose independent rect. 5 4
87 102.73 atmosphere 1015.0 1440 < th dose independent rect. 5 4
88 102.73 temperature 10.0 1440 > th dose independent rect. 9 20
91 102.74 humidity 80.0 43200 > th dose independent rect. 2 6
97 102.81 wind 1.0 10 > th dose independent rect. 4 4
102 102.87 humidity 80.0 43200 < th dose dependent rect. 4 1
111 102.93 humidity 90.0 90 > th dose dependent rect. 5 14
112 102.94 humidity 80.0 43200 > th dose independent rect. 5 1
118 102.96 temperature 25.0 30 < th dose independent rect. 5 3
119 102.97 wind 1.0 43200 > th dose independent rect. 8 1
121 102.97 atmosphere 995.0 30 > th dose independent rect. 8 21
123 102.98 precipitation 0.1 1440 < th dose independent rect. 12 15
126 102.98 precipitation 0.1 1440 < th dose dependent rect. 12 15
129 103.00 wind 3.0 43200 > th dose independent rect. 15 19
130 103.02 humidity 80.0 43200 < th dose independent rect. 5 1
136 103.03 precipitation 0.1 90 < th dose independent rect. 6 23
139 103.03 precipitation 0.1 90 < th dose dependent rect. 6 23
141 103.04 precipitation 0.1 1440 < th dose independent rect. 10 17
142 103.04 precipitation 0.1 1440 > th dose dependent sin 0 NA
144 103.04 precipitation 0.1 1440 < th dose dependent rect. 10 17
151 103.06 wind 1.0 43200 < th dose dependent rect. 24 2
152 103.06 wind 3.0 43200 < th dose dependent rect. 7 3
155 103.07 wind 3.0 43200 < th dose independent rect. 15 19
163 103.09 precipitation 0.1 14400 > th dose dependent rect. 13 5
198 103.18 precipitation 0.1 1440 > th dose dependent rect. 10 17
201 103.19 precipitation 0.1 1440 > th dose dependent rect. 12 15
209 103.21 wind 9.0 4320 < th dose independent rect. 6 1
211 103.21 temperature 25.0 10 < th dose independent rect. 6 1
212 103.21 radiation 10.0 43200 > th dose independent rect. 8 1
220 103.21 wind 5.0 43200 < th dose dependent rect. 15 19
233 103.23 wind 3.0 43200 > th dose independent rect. 2 20
261 103.26 precipitation 0.1 14400 > th dose dependent rect. 13 10
266 103.26 precipitation 0.1 1440 > th dose dependent rect. 5 21
269 103.27 precipitation 0.1 30 < th dose independent rect. 8 21
273 103.27 precipitation 0.1 30 < th dose dependent rect. 8 21
279 103.28 radiation 20.0 43200 < th dose dependent rect. 9 1
289 103.29 radiation 10.0 43200 < th dose dependent rect. 19 8
293 103.30 precipitation 0.1 1440 > th dose independent rect. 13 13
294 103.30 precipitation 0.1 1440 > th dose independent rect. 5 14
302 103.31 wind 3.0 43200 > th dose independent rect. 3 15
323 103.33 wind 3.0 43200 < th dose independent rect. 2 20
355 103.36 precipitation 0.1 1440 > th dose dependent rect. 5 16
360 103.37 precipitation 0.1 1440 < th dose independent rect. 17 10
361 103.37 precipitation 0.1 1440 > th dose independent rect. 16 11
369 103.37 precipitation 0.1 1440 < th dose dependent rect. 17 10
370 103.37 precipitation 0.1 1440 > th dose dependent rect. 9 12
377 103.37 wind 1.0 43200 < th dose dependent rect. 8 21
387 103.38 radiation 1.0 43200 < th dose dependent rect. 22 5
388 103.38 precipitation 0.1 14400 > th dose dependent rect. 16 7
400 103.39 precipitation 0.1 1440 < th dose independent rect. 9 10
407 103.39 precipitation 0.1 1440 < th dose dependent rect. 9 10
437 103.41 wind 3.0 43200 < th dose independent rect. 2 16
445 103.41 precipitation 0.1 1440 > th dose dependent rect. 12 9
455 103.41 wind 5.0 43200 < th dose dependent rect. 2 19
509 103.44 precipitation 0.1 43200 > th dose independent rect. 17 1
510 103.44 precipitation 0.1 43200 < th dose independent rect. 17 1
518 103.44 precipitation 0.1 43200 < th dose dependent rect. 17 1
545 103.45 precipitation 0.1 14400 > th dose dependent sin 20 NA
548 103.45 precipitation 0.1 14400 > th dose dependent rect. 17 3
566 103.46 wind 3.0 43200 > th dose independent rect. 20 23
594 103.48 wind 3.0 43200 > th dose independent sin 1 NA
636 103.49 precipitation 0.1 1440 > th dose independent rect. 8 11
639 103.49 precipitation 0.1 1440 > th dose independent rect. 8 18
660 103.50 precipitation 0.1 14400 > th dose independent rect. 13 5
661 103.50 precipitation 0.1 14400 < th dose independent rect. 13 5
675 103.50 precipitation 0.1 14400 < th dose dependent rect. 13 5
690 103.51 wind 3.0 43200 > th dose independent no NA NA
702 103.51 wind 3.0 43200 > th dose independent rect. 18 23
706 103.51 radiation 1.0 43200 < th dose dependent rect. 24 3
731 103.52 wind 1.0 43200 < th dose dependent rect. 23 5
738 103.52 precipitation 0.1 1440 > th dose dependent rect. 23 20
743 103.53 precipitation 0.1 1440 < th dose independent rect. 12 8
756 103.53 precipitation 0.1 1440 < th dose dependent rect. 12 8
769 103.54 radiation 20.0 43200 > th dose independent rect. 11 1
779 103.54 precipitation 0.1 1440 < th dose independent rect. 4 15
796 103.54 precipitation 0.1 1440 < th dose dependent rect. 4 15
800 103.54 wind 1.0 43200 > th dose dependent rect. 14 20
803 103.55 wind 3.0 43200 < th dose independent sin 2 NA
804 103.55 precipitation 0.1 1440 < th dose independent sin 18 NA
809 103.55 precipitation 0.1 1440 > th dose independent rect. 12 9
818 103.55 precipitation 0.1 1440 < th dose dependent sin 18 NA
830 103.56 precipitation 0.1 1440 > th dose independent sin 18 NA
856 103.57 precipitation 0.1 1440 > th dose independent rect. 12 7
884 103.58 precipitation 0.1 1440 > th dose independent sin 0 NA
886 103.58 precipitation 0.1 1440 < th dose independent sin 0 NA
905 103.58 wind 3.0 43200 > th dose independent rect. 6 23
907 103.58 wind 3.0 43200 < th dose independent rect. 20 23
910 103.58 precipitation 0.1 1440 < th dose dependent sin 0 NA
960 103.60 wind 3.0 43200 > th dose independent rect. 20 1
970 103.60 wind 3.0 43200 < th dose independent rect. 18 23
971 103.60 atmosphere 995.0 90 > th dose independent rect. 6 23
984 103.60 wind 5.0 43200 < th dose dependent rect. 19 23
987 103.61 wind 3.0 43200 < th dose independent no NA NA
997 103.61 wind 3.0 43200 > th dose independent rect. 8 23