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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0657400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Atrophin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0196) R2 : 0.0368
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.173 (0.0414) R2dN8 : 0.0475 R2N8 : 0.0368
σ : 0.37
deviance : 62.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.67 0.314 3.16 0.2 0.103 0.598 0.184 2.22 -0.0896 11 1000 5962 -- --
49.13 0.326 3.17 0.218 0.138 0.657 0.121 -- -0.0719 10.6 1001 6465 -- --
44.77 0.312 3.16 0.205 0.104 0.634 -- 2.36 -0.0924 10.3 999.7 5923 -- --
48.85 0.326 3.18 0.154 0.106 0.746 -- -- -0.0766 9.91 1001 6376 -- --
45.42 0.314 3.16 0.207 -- 0.652 -- 2.4 -0.0905 -- 999.5 5889 -- --
60.4 0.364 3.19 0.237 0.109 -- 0.183 -- -0.146 10.8 -- -- -- --
60.52 0.364 3.19 0.243 0.111 -- -- -- -0.146 10.2 -- -- -- --
49.52 0.328 3.18 0.154 -- 0.745 -- -- -0.0782 -- 1001 6413 -- --
49.48 0.328 3.18 -- 0.107 0.76 -- -- -0.0949 9.94 1001 6361 -- --
61.27 0.366 3.19 0.242 -- -- -- -- -0.146 -- -- -- -- --
62.08 0.369 3.2 -- 0.11 -- -- -- -0.173 9.99 -- -- -- --
50.14 0.33 3.18 -- -- 0.769 -- -- -0.0933 -- 1001 6377 -- --
62.81 0.37 3.2 -- -- -- -- -- -0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.44 wind 5 4320 > th dose dependent rect. 20 3
5 43.14 wind 7 4320 < th dose independent rect. 19 6
10 43.31 wind 7 4320 > th dose independent rect. 19 7
14 43.36 wind 7 4320 < th dose independent rect. 19 3
22 43.45 wind 7 4320 > th dose independent rect. 19 3
63 43.75 humidity 90 1440 < th dose dependent rect. 3 1
150 44.92 humidity 70 1440 > th dose dependent rect. 3 1
151 44.93 atmosphere 995 14400 < th dose independent sin 5 NA
152 44.95 atmosphere 995 14400 > th dose independent sin 5 NA
155 44.96 atmosphere 995 14400 > th dose independent rect. 20 19
159 44.97 atmosphere 995 14400 < th dose dependent rect. 14 13
163 44.97 atmosphere 995 14400 < th dose dependent rect. 1 17
171 44.97 atmosphere 995 14400 < th dose dependent rect. 3 23
206 45.01 atmosphere 995 14400 < th dose dependent sin 16 NA
210 45.02 atmosphere 995 14400 < th dose independent rect. 18 21
211 45.02 atmosphere 995 14400 < th dose dependent sin 3 NA
231 45.04 atmosphere 995 14400 < th dose dependent no NA NA
308 45.15 atmosphere 995 14400 < th dose independent rect. 21 19
317 45.17 atmosphere 995 14400 < th dose independent rect. 24 15
385 45.30 atmosphere 995 14400 > th dose independent sin 12 NA
390 45.31 atmosphere 995 14400 < th dose independent sin 12 NA
432 45.40 atmosphere 995 14400 < th dose independent rect. 17 1
434 45.40 atmosphere 995 14400 < th dose dependent rect. 16 1
451 45.43 atmosphere 995 14400 > th dose independent no NA NA
452 45.43 atmosphere 995 14400 < th dose independent no NA NA
456 45.43 humidity 90 1440 < th dose independent rect. 2 5
458 45.43 atmosphere 995 14400 < th dose independent rect. 14 16
464 45.43 atmosphere 995 14400 > th dose independent rect. 12 19
499 45.43 atmosphere 995 14400 > th dose independent rect. 7 23
505 45.43 atmosphere 995 14400 > th dose independent rect. 14 23
518 45.43 humidity 80 1440 > th dose dependent rect. 2 5
528 45.45 atmosphere 995 14400 > th dose independent rect. 14 17
560 45.46 atmosphere 995 14400 > th dose independent rect. 2 23
579 45.47 atmosphere 995 14400 < th dose independent rect. 1 23
716 45.56 atmosphere 995 14400 > th dose independent rect. 16 1
733 45.57 atmosphere 995 14400 < th dose dependent rect. 4 11
800 45.64 atmosphere 995 14400 > th dose independent rect. 16 5
837 45.69 humidity 90 1440 < th dose independent rect. 2 2
954 45.79 atmosphere 995 14400 > th dose independent rect. 8 11