Os11g0657100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptide chain release factor 1 family protein.
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Os11g0657100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptide chain release factor 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.78 | 0.335 | 11.5 | -0.947 | 0.938 | -0.512 | -0.102 | -1.99 | -0.49 | 21.3 | 29.6 | 1728 | -- | -- |
| 50.5 | 0.331 | 11.6 | -1.35 | 0.947 | -0.678 | -0.0601 | -- | -0.624 | 21.4 | 28.73 | 1653 | -- | -- |
| 50.08 | 0.33 | 11.6 | -1.13 | 0.946 | -0.621 | -- | -0.875 | -0.602 | 21.4 | 29.16 | 1666 | -- | -- |
| 50.21 | 0.33 | 11.6 | -1.35 | 0.938 | -0.7 | -- | -- | -0.673 | 21.4 | 28.9 | 1670 | -- | -- |
| 70.14 | 0.39 | 11.6 | -1.3 | -- | -0.995 | -- | -0.538 | -0.824 | -- | 26 | 697 | -- | -- |
| 70.09 | 0.392 | 11.6 | -1.14 | 0.983 | -- | -0.0225 | -- | -0.573 | 21.2 | -- | -- | -- | -- |
| 70.09 | 0.392 | 11.6 | -1.14 | 0.984 | -- | -- | -- | -0.573 | 21.2 | -- | -- | -- | -- |
| 69.15 | 0.387 | 11.6 | -1.48 | -- | -1.12 | -- | -- | -0.897 | -- | 26.09 | 710 | -- | -- |
| 95.38 | 0.455 | 11.6 | -- | 0.942 | -0.473 | -- | -- | -0.472 | 21.3 | 29.2 | 1732 | -- | -- |
| 126.31 | 0.525 | 11.6 | -1.13 | -- | -- | -- | -- | -0.578 | -- | -- | -- | -- | -- |
| 104.19 | 0.477 | 11.6 | -- | 0.984 | -- | -- | -- | -0.446 | 21.2 | -- | -- | -- | -- |
| 123.43 | 0.517 | 11.6 | -- | -- | -0.858 | -- | -- | -0.694 | -- | 25.79 | 660 | -- | -- |
| 160.2 | 0.591 | 11.5 | -- | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 5 | 50.43 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 6 | 50.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 16 | 50.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 23 | 51.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 36 | 51.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 37 | 51.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 43 | 51.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 46 | 51.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 53 | 51.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 54 | 51.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 57 | 51.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 69 | 51.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 78 | 51.30 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 132 | 51.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 165 | 51.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 189 | 51.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 218 | 51.43 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 237 | 51.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 258 | 51.46 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 286 | 51.50 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 308 | 51.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 310 | 51.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 335 | 51.55 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 429 | 51.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 474 | 51.72 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 565 | 51.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 741 | 51.98 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 774 | 52.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 809 | 52.07 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 815 | 52.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 819 | 52.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 879 | 52.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 887 | 52.20 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 902 | 52.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 904 | 52.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 928 | 52.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 936 | 52.27 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 980 | 52.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 22 |