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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0656100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.0334) R2 : 0.39
β1 : -0.465 (0.123) R2dD : 0.0207 R2D : 0.0127
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.44 (0.4) R2dE : 0.277 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.1 (1.11) R2dD*E : 0.245 R2D*E : 0.0819
γ1 : -0.219 (0.0715) R2dN8 : 0.0167 R2N8 : 0.012
σ : 0.626
deviance : 180.47
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.55
memory length : 90
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 1.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.19 0.624 5.12 -0.438 0.217 6 -0.585 -15.9 -0.212 12.2 90.2 91 18 1.07
240.16 0.722 5.1 -0.527 0.152 3.88 -0.994 -- -0.213 15.6 91 93 18.4 1.1
177.46 0.62 5.11 -0.465 0.224 5.93 -- -15.4 -0.211 11.4 90.37 89 18.1 1.05
224.92 0.698 5.03 -0.592 0.133 4.77 -- -- -0.0671 13.4 91.85 52 18.4 0.97
180.47 0.626 5.12 -0.465 -- 5.44 -- -14.1 -0.219 -- 90.55 90 18.1 1.3
280.16 0.785 5.12 -0.518 0.155 -- -1.05 -- -0.262 16.1 -- -- -- --
282.55 0.787 5.12 -0.529 0.179 -- -- -- -0.268 13.5 -- -- -- --
221.99 0.694 5.12 -0.506 -- 5.53 -- -- -0.244 -- 91.04 52 18 1.55
225.5 0.699 5.1 -- 0.22 5.64 -- -- -0.17 12 91.28 51 18.3 1.25
284.51 0.788 5.12 -0.536 -- -- -- -- -0.272 -- -- -- -- --
289.94 0.797 5.11 -- 0.188 -- -- -- -0.209 13.6 -- -- -- --
228.77 0.704 5.1 -- -- 5.56 -- -- -0.177 -- 91.32 51 18.3 1.27
292.1 0.798 5.11 -- -- -- -- -- -0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.32 humidity 90 90 > th dose independent rect. 18 1
2 177.23 temperature 20 10 < th dose independent rect. 19 1
7 177.58 temperature 20 10 < th dose dependent rect. 20 1
28 179.55 humidity 90 90 > th dose dependent rect. 18 1
44 208.14 humidity 90 30 > th dose dependent rect. 15 5
68 212.03 wind 3 10 < th dose dependent rect. 20 1
89 217.36 humidity 90 30 > th dose independent rect. 15 5
98 217.95 humidity 90 270 > th dose dependent rect. 16 4
121 225.20 humidity 90 270 > th dose dependent rect. 12 8
125 225.61 temperature 20 30 < th dose dependent rect. 12 9
167 230.08 humidity 90 30 > th dose dependent rect. 8 13
172 230.40 humidity 90 270 > th dose independent rect. 12 8
238 234.03 wind 3 10 < th dose independent rect. 19 2
387 243.58 humidity 80 43200 < th dose independent rect. 1 1
388 243.73 humidity 90 10 > th dose dependent rect. 6 15
389 243.74 humidity 80 43200 < th dose dependent rect. 24 2
392 243.82 humidity 80 43200 > th dose independent rect. 3 1
393 243.86 humidity 80 43200 < th dose independent rect. 3 1
399 243.90 humidity 80 43200 < th dose independent rect. 24 5
400 243.90 humidity 80 43200 < th dose dependent rect. 22 6
410 243.97 humidity 80 43200 > th dose independent rect. 1 1
435 244.22 humidity 80 43200 > th dose independent rect. 1 4
448 244.34 humidity 80 43200 < th dose dependent rect. 3 1
449 244.34 temperature 20 270 > th dose dependent rect. 22 22
491 244.79 temperature 20 270 > th dose dependent rect. 11 23
495 244.87 temperature 30 270 < th dose dependent rect. 4 16
505 245.10 temperature 20 270 > th dose dependent sin 20 NA
599 246.58 temperature 20 720 > th dose dependent rect. 24 18
615 246.86 temperature 20 270 > th dose dependent no NA NA
634 247.10 atmosphere 1005 30 > th dose independent rect. 19 1
639 247.17 temperature 20 270 > th dose dependent rect. 4 23
698 247.75 temperature 20 270 > th dose dependent rect. 10 10
719 247.96 wind 3 43200 > th dose independent rect. 6 1
733 248.04 temperature 20 720 > th dose dependent rect. 15 22
772 248.33 wind 3 43200 < th dose independent rect. 6 1
819 248.86 wind 3 14400 < th dose independent rect. 3 1
827 248.93 temperature 20 720 > th dose dependent sin 2 NA
845 249.12 humidity 90 10 > th dose independent rect. 8 13
864 249.23 wind 1 43200 < th dose dependent rect. 24 2
872 249.29 wind 3 43200 < th dose independent rect. 11 1
873 249.29 wind 3 43200 > th dose independent rect. 11 2
899 249.47 wind 3 43200 < th dose dependent rect. 6 6
911 249.58 radiation 10 43200 > th dose independent rect. 9 1
930 249.73 wind 3 14400 > th dose independent rect. 3 1
936 249.81 wind 1 43200 < th dose independent rect. 24 2
949 249.89 humidity 90 30 > th dose independent rect. 6 15
969 250.02 temperature 20 14400 < th dose independent rect. 19 1
970 250.02 wind 3 43200 < th dose independent rect. 3 12
971 250.02 wind 3 43200 < th dose independent rect. 1 14
974 250.05 wind 3 43200 < th dose independent rect. 6 8
977 250.06 wind 3 43200 < th dose independent rect. 20 2
981 250.08 wind 3 43200 > th dose independent rect. 2 14
982 250.08 wind 3 43200 < th dose independent rect. 20 19
992 250.13 wind 3 43200 > th dose independent rect. 5 10
1000 250.20 wind 3 43200 > th dose independent rect. 20 2