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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0655200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NB-ARC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0218) R2 : 0.00107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0321 (0.0459) R2dN8 : 0.00139 R2N8 : 0.00107
σ : 0.411
deviance : 77.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69 0.39 3.32 0.2 0.261 -0.285 -0.428 -1.42 -0.00398 7.28 38.56 5888 -- --
71.68 0.394 3.32 0.0815 0.299 -0.351 -0.442 -- -0.0492 7.07 41.55 4785 -- --
69.48 0.388 3.32 0.196 0.26 -0.287 -- -1.43 -0.00419 7.42 36.98 5913 -- --
72.07 0.395 3.32 0.0744 0.258 -0.371 -- -- -0.0422 7.39 35 4290 -- --
73.06 0.398 3.33 0.195 -- -0.291 -- -1.36 -0.00273 -- 35.5 5805 -- --
73.26 0.401 3.3 0.0656 0.259 -- -0.449 -- 0.0335 7.21 -- -- -- --
73.79 0.402 3.3 0.0568 0.258 -- -- -- 0.0347 7.4 -- -- -- --
75.61 0.405 3.33 0.0779 -- -0.371 -- -- -0.0384 -- -35.5 4287 -- --
72.22 0.396 3.32 -- 0.259 -0.364 -- -- -0.0495 7.36 35.98 4290 -- --
77.33 0.411 3.31 0.0609 -- -- -- -- 0.0389 -- -- -- -- --
73.88 0.402 3.3 -- 0.258 -- -- -- 0.0284 7.38 -- -- -- --
75.77 0.405 3.33 -- -- -0.364 -- -- -0.0454 -- 26.2 4286 -- --
77.42 0.411 3.31 -- -- -- -- -- 0.0321 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.21 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 65.96 atmosphere 995.0 720 > th dose independent rect. 7 8
4 66.17 atmosphere 1015.0 720 < th dose independent rect. 3 16
5 66.25 wind 9.0 720 < th dose independent rect. 19 8
6 66.30 atmosphere 1005.0 10 > th dose dependent rect. 2 6
8 66.35 radiation 10.0 30 > th dose independent rect. 6 2
21 66.36 precipitation 0.1 720 < th dose independent rect. 7 8
22 66.36 precipitation 0.1 720 < th dose dependent rect. 7 8
23 66.43 precipitation 0.1 720 < th dose independent rect. 19 8
24 66.43 precipitation 0.1 720 < th dose dependent rect. 19 8
26 66.59 precipitation 0.1 720 < th dose independent rect. 3 16
27 66.59 precipitation 0.1 720 < th dose dependent rect. 3 16
28 66.60 temperature 10.0 720 > th dose independent rect. 7 8
29 66.60 atmosphere 1015.0 720 < th dose independent rect. 7 8
30 66.60 temperature 10.0 720 > th dose independent rect. 15 16
31 66.65 temperature 10.0 720 > th dose independent rect. 19 8
32 66.65 temperature 30.0 720 < th dose independent rect. 19 8
33 66.65 humidity 50.0 720 > th dose independent rect. 19 8
34 66.65 atmosphere 995.0 720 > th dose independent rect. 19 8
35 66.65 radiation 1.0 720 < th dose independent rect. 19 8
40 66.65 temperature 10.0 720 > th dose independent rect. 3 16
41 66.65 radiation 1.0 720 < th dose dependent rect. 19 8
73 66.71 radiation 10.0 10 > th dose dependent rect. 6 1
103 66.87 humidity 90.0 90 < th dose independent rect. 1 6
105 67.01 atmosphere 1005.0 90 > th dose dependent rect. 2 1
106 67.03 atmosphere 995.0 720 > th dose independent rect. 3 16
110 67.20 atmosphere 1005.0 10 > th dose dependent rect. 2 2
114 67.32 atmosphere 1010.0 30 < th dose dependent rect. 2 1
117 67.40 atmosphere 995.0 720 > th dose independent rect. 15 16
120 67.52 wind 9.0 30 < th dose independent rect. 3 23
122 67.55 temperature 25.0 90 > th dose independent rect. 1 1
123 67.55 temperature 15.0 30 > th dose independent rect. 3 23
125 67.56 wind 1.0 30 < th dose dependent rect. 2 1
126 67.59 wind 1.0 10 < th dose independent rect. 2 1
134 67.61 temperature 25.0 720 > th dose dependent rect. 3 6
147 67.64 temperature 10.0 30 > th dose independent rect. 2 1
149 67.64 temperature 30.0 30 < th dose independent rect. 2 1
150 67.64 humidity 50.0 30 > th dose independent rect. 2 1
153 67.64 atmosphere 995.0 30 > th dose independent rect. 2 1
154 67.64 atmosphere 1010.0 30 < th dose independent rect. 2 1
156 67.64 radiation 1.0 30 < th dose independent rect. 2 1
161 67.64 precipitation 0.1 30 < th dose independent rect. 2 1
163 67.64 temperature 10.0 30 > th dose dependent rect. 2 1
164 67.64 radiation 1.0 30 < th dose dependent rect. 2 1
169 67.64 precipitation 0.1 30 < th dose dependent rect. 2 1
172 67.65 humidity 90.0 30 > th dose independent rect. 2 1
176 67.65 temperature 30.0 30 < th dose dependent rect. 2 1
177 67.65 humidity 50.0 30 > th dose dependent rect. 2 1
219 67.70 atmosphere 995.0 30 > th dose dependent rect. 2 1
222 67.72 wind 1.0 30 > th dose independent rect. 2 1
223 67.73 atmosphere 1005.0 30 > th dose independent rect. 2 1
231 67.80 radiation 1.0 43200 < th dose dependent rect. 3 1
235 67.86 wind 9.0 720 < th dose independent rect. 15 16
236 67.86 precipitation 0.1 720 < th dose independent rect. 15 16
237 67.86 atmosphere 1000.0 90 > th dose independent rect. 7 23
238 67.86 precipitation 0.1 720 < th dose dependent rect. 15 16
247 68.06 precipitation 0.1 30 < th dose independent rect. 3 23
250 68.06 precipitation 0.1 30 < th dose dependent rect. 3 23
252 68.11 radiation 40.0 720 < th dose independent rect. 15 16
256 68.21 atmosphere 995.0 720 > th dose independent rect. 23 16
263 68.23 humidity 80.0 14400 < th dose dependent rect. 2 7
265 68.24 atmosphere 1000.0 10 > th dose independent rect. 8 22
266 68.24 radiation 1.0 4320 < th dose dependent rect. 3 1
270 68.27 temperature 25.0 90 < th dose independent rect. 6 1
278 68.30 wind 9.0 1440 < th dose independent rect. 3 1
279 68.30 temperature 10.0 1440 > th dose independent rect. 3 1
282 68.30 temperature 30.0 1440 < th dose independent rect. 3 1
286 68.30 humidity 50.0 1440 > th dose independent rect. 3 1
295 68.30 atmosphere 995.0 1440 > th dose independent rect. 3 1
296 68.30 radiation 1.0 1440 < th dose independent rect. 3 1
316 68.30 temperature 10.0 1440 > th dose independent rect. 4 23
335 68.37 humidity 80.0 14400 < th dose dependent rect. 21 13
342 68.52 atmosphere 1015.0 720 < th dose independent rect. 3 8
348 68.60 radiation 10.0 30 > th dose independent rect. 15 17
359 68.71 humidity 50.0 30 > th dose independent rect. 3 23
365 68.76 precipitation 0.1 720 < th dose independent rect. 15 8
366 68.76 atmosphere 1010.0 10 < th dose independent rect. 3 23
367 68.76 precipitation 0.1 720 < th dose dependent rect. 15 8
369 68.79 temperature 25.0 720 > th dose independent rect. 3 6
371 68.80 wind 9.0 720 < th dose independent rect. 7 8
373 68.81 humidity 70.0 14400 > th dose independent rect. 6 4
385 68.82 humidity 70.0 14400 > th dose independent rect. 8 2
391 68.83 radiation 10.0 30 < th dose dependent rect. 3 23
392 68.84 humidity 70.0 14400 < th dose independent rect. 8 2
394 68.86 atmosphere 1000.0 30 > th dose independent rect. 8 18
416 68.91 wind 9.0 720 < th dose independent rect. 3 8
425 68.95 wind 3.0 30 < th dose dependent rect. 6 1
430 68.98 temperature 25.0 90 > th dose dependent rect. 14 21
432 69.00 humidity 70.0 4320 > th dose dependent rect. 3 9
438 69.04 precipitation 0.1 720 < th dose independent rect. 23 16
442 69.04 humidity 50.0 4320 > th dose dependent rect. 23 16
443 69.04 precipitation 0.1 720 < th dose dependent rect. 23 16
446 69.06 temperature 25.0 720 > th dose independent rect. 8 1
455 69.08 humidity 50.0 4320 > th dose dependent rect. 2 13
459 69.09 temperature 10.0 720 > th dose independent rect. 15 8
460 69.09 atmosphere 1000.0 90 > th dose independent rect. 8 11
461 69.09 temperature 10.0 720 > th dose independent rect. 23 16
482 69.12 precipitation 0.1 720 < th dose independent rect. 3 8
483 69.12 atmosphere 1005.0 30 > th dose dependent rect. 6 1
484 69.12 precipitation 0.1 720 < th dose dependent rect. 3 8
490 69.13 wind 1.0 10 < th dose independent rect. 6 1
506 69.15 humidity 50.0 4320 > th dose dependent sin 5 NA
519 69.17 atmosphere 1000.0 90 < th dose independent rect. 6 20
528 69.18 humidity 50.0 720 > th dose independent rect. 7 8
531 69.18 wind 1.0 14400 < th dose dependent rect. 6 1
539 69.19 humidity 50.0 4320 > th dose dependent rect. 11 2
565 69.21 humidity 90.0 4320 < th dose dependent rect. 23 16
567 69.21 temperature 10.0 30 > th dose dependent rect. 3 23
568 69.22 humidity 70.0 4320 > th dose independent rect. 10 2
585 69.23 humidity 90.0 90 < th dose independent rect. 2 1
608 69.24 humidity 90.0 4320 < th dose dependent rect. 3 12
628 69.27 temperature 10.0 720 > th dose independent rect. 3 8
630 69.27 atmosphere 995.0 720 > th dose independent rect. 3 8
633 69.27 temperature 10.0 720 > th dose independent rect. 11 16
655 69.29 humidity 90.0 4320 < th dose dependent rect. 11 2
705 69.32 humidity 90.0 4320 < th dose dependent rect. 10 5
723 69.34 humidity 50.0 720 > th dose independent rect. 3 8
737 69.34 humidity 90.0 4320 < th dose dependent sin 5 NA
738 69.34 humidity 60.0 14400 > th dose dependent rect. 8 1
739 69.34 humidity 80.0 4320 > th dose dependent rect. 7 2
751 69.35 humidity 70.0 4320 > th dose independent rect. 10 5
799 69.37 atmosphere 1000.0 30 > th dose independent rect. 11 21
843 69.39 atmosphere 1000.0 10 > th dose independent rect. 21 23
862 69.40 humidity 70.0 4320 > th dose independent sin 3 NA
881 69.41 atmosphere 1000.0 10 > th dose independent rect. 11 23
894 69.42 humidity 70.0 4320 > th dose independent rect. 10 8
947 69.44 humidity 60.0 14400 < th dose independent rect. 11 1
954 69.44 temperature 30.0 720 < th dose independent rect. 9 12
989 69.46 humidity 70.0 4320 < th dose independent rect. 10 5