Os11g0654100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os11g0654100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 492.86 | 1.04 | 3.49 | -0.882 | 0.715 | 1.2 | -3.45 | -2.57 | -0.344 | 19.5 | 1.009 | 10115 | -- | -- |
| 500.17 | 1.04 | 3.5 | -1.24 | 0.713 | 1.64 | -3.27 | -- | -0.372 | 19.5 | 0.8394 | 11726 | -- | -- |
| 524.22 | 1.07 | 3.48 | -0.817 | 0.706 | 1.24 | -- | -2.5 | -0.347 | 20.3 | 1.02 | 10138 | -- | -- |
| 532.67 | 1.07 | 3.53 | -1.35 | 0.713 | 1.62 | -- | -- | -0.407 | 20.1 | 1 | 10160 | -- | -- |
| 551.81 | 1.09 | 3.47 | -0.817 | -- | 1.3 | -- | -2.52 | -0.348 | -- | 1.01 | 10166 | -- | -- |
| 546.83 | 1.1 | 3.62 | -1.88 | 0.723 | -- | -3.47 | -- | -0.78 | 19.6 | -- | -- | -- | -- |
| 578.96 | 1.13 | 3.62 | -1.8 | 0.728 | -- | -- | -- | -0.788 | 20.5 | -- | -- | -- | -- |
| 558.91 | 1.1 | 3.52 | -1.34 | -- | 1.68 | -- | -- | -0.428 | -- | 0.9 | 10173 | -- | -- |
| 559.45 | 1.1 | 3.5 | -- | 0.8 | 1.94 | -- | -- | -0.282 | 20.1 | 0.33 | 11496 | -- | -- |
| 608.69 | 1.15 | 3.6 | -1.81 | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
| 664.69 | 1.21 | 3.57 | -- | 0.736 | -- | -- | -- | -0.588 | 20.4 | -- | -- | -- | -- |
| 585.69 | 1.13 | 3.48 | -- | -- | 2.13 | -- | -- | -0.251 | -- | 0.3313 | 11639 | -- | -- |
| 694.76 | 1.23 | 3.56 | -- | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 487.28 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 4 | 487.33 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 7 | 487.39 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 12 | 487.48 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 14 | 487.48 | wind | 5 | 14400 | < th | dose independent | rect. | 12 | 17 |
| 23 | 487.59 | wind | 5 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 31 | 487.70 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 35 | 487.72 | wind | 3 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 60 | 487.92 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 65 | 487.95 | wind | 5 | 14400 | < th | dose independent | sin | 0 | NA |
| 75 | 488.02 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 19 |
| 96 | 488.14 | wind | 5 | 14400 | > th | dose independent | sin | 0 | NA |
| 118 | 488.22 | wind | 3 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 165 | 488.42 | wind | 3 | 14400 | > th | dose dependent | sin | 1 | NA |
| 396 | 489.12 | wind | 5 | 14400 | < th | dose independent | sin | 17 | NA |
| 408 | 489.15 | wind | 5 | 14400 | > th | dose independent | sin | 17 | NA |
| 505 | 489.38 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 543 | 489.47 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 620 | 489.66 | wind | 3 | 14400 | > th | dose dependent | sin | 17 | NA |
| 653 | 489.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 16 |
| 656 | 489.73 | wind | 5 | 14400 | > th | dose dependent | no | NA | NA |
| 690 | 489.80 | wind | 9 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 720 | 489.87 | wind | 9 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 740 | 489.90 | wind | 9 | 14400 | < th | dose dependent | rect. | 10 | 19 |
| 830 | 490.08 | wind | 9 | 14400 | < th | dose dependent | sin | 0 | NA |
| 872 | 490.16 | wind | 5 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 874 | 490.17 | wind | 9 | 14400 | < th | dose dependent | rect. | 4 | 14 |