Os11g0654000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0654000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.7 | 0.561 | 3.94 | 0.127 | 0.209 | 0.579 | -0.755 | -1.65 | -0.0808 | 22.3 | 32.78 | 251 | -- | -- |
| 145.72 | 0.562 | 3.93 | 0.18 | 0.211 | 0.641 | -0.484 | -- | -0.0446 | 21.5 | 37.01 | 247 | -- | -- |
| 144.34 | 0.56 | 3.94 | 0.16 | 0.222 | 0.526 | -- | -1.28 | -0.0528 | 20.8 | 32.83 | 255 | -- | -- |
| 146.21 | 0.563 | 3.94 | 0.196 | 0.241 | 0.598 | -- | -- | -0.0562 | 20.6 | 37.1 | 245 | -- | -- |
| 144.52 | 0.56 | 3.94 | 0.0936 | -- | 0.466 | -- | -1.08 | -0.108 | -- | 33.89 | 719 | -- | -- |
| 150.38 | 0.575 | 3.93 | 0.185 | 0.297 | -- | -0.224 | -- | -0.0195 | 18.1 | -- | -- | -- | -- |
| 150.49 | 0.574 | 3.93 | 0.188 | 0.296 | -- | -- | -- | -0.0201 | 17.9 | -- | -- | -- | -- |
| 146.52 | 0.564 | 3.93 | 0.159 | -- | 0.432 | -- | -- | -0.09 | -- | 37.95 | 730 | -- | -- |
| 147.18 | 0.565 | 3.94 | -- | 0.23 | 0.57 | -- | -- | -0.0804 | 20.7 | 36.6 | 245 | -- | -- |
| 155.03 | 0.582 | 3.92 | 0.179 | -- | -- | -- | -- | -0.027 | -- | -- | -- | -- | -- |
| 151.42 | 0.576 | 3.93 | -- | 0.293 | -- | -- | -- | -0.041 | 17.9 | -- | -- | -- | -- |
| 147.26 | 0.565 | 3.94 | -- | -- | 0.418 | -- | -- | -0.104 | -- | 37.95 | 737 | -- | -- |
| 155.87 | 0.583 | 3.93 | -- | -- | -- | -- | -- | -0.0468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.90 | wind | 1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 2 | 140.91 | wind | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 3 | 140.92 | humidity | 90 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 4 | 140.94 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 5 | 141.20 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 9 |
| 6 | 141.24 | wind | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 7 | 141.26 | wind | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 8 | 141.30 | wind | 1 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 9 | 141.30 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 1 |
| 47 | 141.63 | wind | 1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 49 | 141.66 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 64 | 141.73 | radiation | 40 | 270 | < th | dose independent | sin | 12 | NA |
| 65 | 141.75 | wind | 1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 68 | 141.89 | wind | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 69 | 141.89 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 7 |
| 70 | 141.92 | radiation | 40 | 270 | < th | dose independent | sin | 8 | NA |
| 71 | 141.93 | wind | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 72 | 141.93 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 4 | 3 |
| 73 | 141.94 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 77 | 142.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 80 | 142.06 | radiation | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 81 | 142.08 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 12 |
| 84 | 142.17 | radiation | 30 | 270 | > th | dose independent | sin | 12 | NA |
| 109 | 142.26 | radiation | 40 | 720 | < th | dose independent | rect. | 23 | 14 |
| 111 | 142.27 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 23 |
| 115 | 142.34 | radiation | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 119 | 142.36 | radiation | 30 | 270 | > th | dose independent | rect. | 13 | 22 |
| 123 | 142.40 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 124 | 142.40 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 10 |
| 125 | 142.41 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 130 | 142.45 | radiation | 20 | 720 | > th | dose independent | rect. | 7 | 8 |
| 132 | 142.46 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 179 | 142.56 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 180 | 142.56 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 23 |
| 201 | 142.59 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 16 |
| 204 | 142.60 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 214 | 142.64 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 274 | 142.70 | radiation | 40 | 270 | < th | dose independent | sin | 2 | NA |
| 280 | 142.71 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 313 | 142.83 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 22 |
| 321 | 142.84 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 1 | 13 |
| 356 | 142.87 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 358 | 142.88 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 8 |
| 367 | 142.89 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 403 | 142.95 | radiation | 30 | 270 | > th | dose independent | no | NA | NA |
| 543 | 142.97 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 544 | 142.97 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 554 | 142.97 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 561 | 142.97 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 20 |
| 562 | 142.97 | radiation | 20 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 563 | 142.98 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 2 |
| 580 | 142.99 | wind | 1 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 600 | 143.01 | radiation | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 602 | 143.02 | wind | 1 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 665 | 143.10 | wind | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 682 | 143.11 | wind | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 696 | 143.15 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 4 |
| 699 | 143.15 | radiation | 20 | 90 | < th | dose independent | rect. | 10 | 9 |
| 743 | 143.21 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 744 | 143.22 | radiation | 20 | 90 | < th | dose independent | sin | 23 | NA |
| 754 | 143.23 | radiation | 20 | 90 | < th | dose independent | rect. | 10 | 23 |
| 811 | 143.27 | wind | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 817 | 143.28 | wind | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 848 | 143.29 | wind | 1 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 863 | 143.30 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 903 | 143.31 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 918 | 143.32 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 14 |
| 926 | 143.33 | wind | 1 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 936 | 143.34 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 938 | 143.34 | radiation | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 970 | 143.35 | wind | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 986 | 143.37 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 10 |