Os11g0652100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0652100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : NB-ARC domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.76 | 0.671 | 3.29 | -0.832 | 0.654 | 1.81 | -0.51 | 0.265 | -0.298 | 1.05 | 0.06849 | 5821 | -- | -- |
| 202.39 | 0.663 | 3.28 | -0.768 | 0.656 | 1.76 | -0.556 | -- | -0.278 | 1.04 | 0.06999 | 10170 | -- | -- |
| 204.82 | 0.667 | 3.29 | -0.793 | 0.65 | 1.8 | -- | 0.16 | -0.293 | 1.1 | 0.07273 | 5826 | -- | -- |
| 203.59 | 0.665 | 3.28 | -0.743 | 0.684 | 1.77 | -- | -- | -0.275 | 1.1 | 0.06 | 10157 | -- | -- |
| 213.79 | 0.681 | 3.26 | -0.722 | -- | 2.17 | -- | 0.0066 | -0.261 | -- | 0.08434 | 6081 | -- | -- |
| 252.36 | 0.745 | 3.35 | -1.43 | 0.726 | -- | -0.594 | -- | -0.565 | 0.979 | -- | -- | -- | -- |
| 253.83 | 0.746 | 3.34 | -1.41 | 0.728 | -- | -- | -- | -0.562 | 1.05 | -- | -- | -- | -- |
| 213.76 | 0.681 | 3.27 | -0.713 | -- | 2.2 | -- | -- | -0.261 | -- | 0.08484 | 6081 | -- | -- |
| 212.92 | 0.68 | 3.25 | -- | 0.682 | 1.99 | -- | -- | -0.149 | 1.08 | 0.06144 | 11591 | -- | -- |
| 286.75 | 0.791 | 3.33 | -1.38 | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
| 306.05 | 0.818 | 3.31 | -- | 0.705 | -- | -- | -- | -0.405 | 0.971 | -- | -- | -- | -- |
| 225.17 | 0.699 | 3.24 | -- | -- | 2.53 | -- | -- | -0.149 | -- | 0.0831 | 6070 | -- | -- |
| 336.99 | 0.857 | 3.3 | -- | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.55 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 3 | 199.57 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 10 |
| 35 | 199.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 45 | 199.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 60 | 199.99 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 64 | 200.02 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 80 | 200.08 | wind | 9 | 43200 | < th | dose dependent | sin | 19 | NA |
| 92 | 200.12 | wind | 1 | 43200 | > th | dose dependent | sin | 19 | NA |
| 111 | 200.19 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 156 | 200.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 232 | 200.62 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 261 | 200.71 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 294 | 200.79 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 306 | 200.82 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 310 | 200.83 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 311 | 200.83 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 324 | 200.86 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 329 | 200.87 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 363 | 200.93 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 418 | 201.01 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 420 | 201.01 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 21 |
| 421 | 201.01 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 21 |
| 451 | 201.06 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 500 | 201.11 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 526 | 201.13 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 535 | 201.14 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 564 | 201.16 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 573 | 201.17 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 583 | 201.17 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 605 | 201.19 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 617 | 201.20 | wind | 7 | 43200 | > th | dose independent | sin | 14 | NA |
| 623 | 201.20 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 632 | 201.21 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 644 | 201.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 687 | 201.26 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 730 | 201.30 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 734 | 201.31 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 788 | 201.36 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 797 | 201.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 818 | 201.38 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 824 | 201.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |