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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0649700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF588 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.27 (0.0648) R2 : 0.141
β1 : 1.75 (0.265) R2dD : 0.117 R2D : -0.0191
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.61 (0.235) R2dE : 0.116 R2E : 0.0247
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.81 (0.67) R2dD*E : 0.0455 R2D*E : -0.0108
γ1 : -0.178 (0.144) R2dN8 : 0.0046 R2N8 : -0.00813
σ : 1.16
deviance : 622.69
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.25
memory length : 1430
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 0.611

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
608.28 1.16 4.26 1.67 0.392 -1.64 1.47 -2.93 -0.15 13 89.79 1425 5.95 0.817
630.65 1.17 4.18 1.08 0.435 -1.54 1.34 -- -0.0475 12.8 90.47 1797 6.13 0.983
613.23 1.15 4.26 1.77 0.394 -1.59 -- -2.83 -0.144 11.9 90 1427 5.91 0.633
633.38 1.17 4.17 1.06 0.428 -1.98 -- -- -0.0943 11.7 91.5 1880 6.15 0.508
622.69 1.16 4.27 1.75 -- -1.61 -- -2.81 -0.178 -- 90.25 1430 5.9 0.611
692.25 1.23 4.14 0.794 0.337 -- 1.28 -- 0.162 12.9 -- -- -- --
698.12 1.24 4.14 0.838 0.358 -- -- -- 0.166 11.4 -- -- -- --
645 1.18 4.17 1.1 -- -1.61 -- -- -0.085 -- 91.59 1444 6.15 0.362
656.28 1.19 4.18 -- 0.587 -1.83 -- -- -0.13 11.4 91.45 1821 6.53 0.0507
706.15 1.24 4.14 0.829 -- -- -- -- 0.162 -- -- -- -- --
716.62 1.25 4.16 -- 0.349 -- -- -- 0.0727 11.2 -- -- -- --
670.24 1.21 4.18 -- -- -1.39 -- -- -0.094 -- 92 1417 6.27 0.2
724.26 1.26 4.16 -- -- -- -- -- 0.0705 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 593.16 wind 7 43200 > th dose independent rect. 18 1
2 598.65 wind 7 43200 < th dose independent rect. 18 1
3 598.80 wind 7 43200 > th dose dependent rect. 18 1
4 599.35 humidity 90 14400 < th dose independent rect. 6 1
5 599.46 humidity 90 14400 > th dose independent rect. 6 1
6 600.74 atmosphere 1005 14400 < th dose independent rect. 17 1
7 601.30 atmosphere 1005 14400 > th dose independent rect. 17 1
14 603.07 humidity 90 14400 > th dose dependent rect. 6 1
74 608.09 humidity 90 14400 > th dose dependent rect. 5 3
114 610.63 atmosphere 1005 14400 > th dose independent sin 19 NA
135 611.48 humidity 90 14400 > th dose dependent rect. 2 13
237 613.63 atmosphere 1005 14400 < th dose independent sin 19 NA
257 613.96 humidity 90 14400 > th dose dependent sin 3 NA
304 615.07 wind 7 43200 > th dose dependent rect. 16 3
403 617.34 humidity 90 1440 > th dose dependent rect. 6 1
437 617.88 humidity 90 14400 < th dose independent rect. 3 5
486 618.76 wind 1 720 > th dose independent rect. 7 18
536 619.42 humidity 90 14400 > th dose independent rect. 23 17
579 620.00 humidity 90 720 > th dose independent rect. 6 1
583 620.02 humidity 90 14400 < th dose independent rect. 23 18
595 620.12 humidity 90 14400 > th dose independent rect. 23 9
640 620.63 atmosphere 1005 14400 > th dose independent no NA NA
687 621.20 humidity 90 14400 < th dose independent rect. 23 10
833 622.20 temperature 20 720 > th dose dependent rect. 3 8
882 622.41 atmosphere 1000 14400 > th dose dependent rect. 16 1
886 622.43 radiation 20 43200 > th dose independent rect. 6 1
937 622.57 humidity 90 14400 > th dose independent sin 5 NA