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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0649600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein CHP1569, integral membrane plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0459) R2 : 0.22
β1 : -1.41 (0.166) R2dD : 0.134 R2D : 0.077
β2 : 1.18 (0.183) R2dC : 0.19 R2C : -0.192
β3 : 1.59 (0.193) R2dE : 0.319 R2E : -0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.33 (0.0987) R2dN8 : 0.027 R2N8 : -0.0248
σ : 0.838
deviance : 324.03
__
_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : 15.62
memory length : 225
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.88
open length of G : 8.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.01 0.83 3.75 -1.89 1.62 1.95 -3.71 -3.83 -0.429 20 10.7 275 0.0667 8.95
326.78 0.842 3.74 -1.58 1.86 2.25 -2.19 -- -0.427 19.7 12.18 279 0.0166 9.1
325.36 0.84 3.73 -1.56 0.982 1.41 -- -1 -0.395 20.5 16.9 224 0.866 8.21
324.03 0.838 3.7 -1.41 1.18 1.59 -- -- -0.33 20.3 15.62 225 0.88 8.33
348.49 0.869 3.71 -1.74 -- 1.25 -- -0.546 -0.421 -- 12.55 1635 0.383 8.37
355.55 0.884 3.63 -1.3 0.46 -- -1.28 -- -0.14 1.67 -- -- -- --
361.25 0.89 3.62 -1.26 0.485 -- -- -- -0.134 2.66 -- -- -- --
348.91 0.87 3.71 -1.47 -- 1.06 -- -- -0.354 -- 11.61 1630 1.23 7.62
375.65 0.903 3.66 -- 1.06 1.43 -- -- -0.138 20.2 14.01 205 1.37 7.77
374.96 0.905 3.62 -1.24 -- -- -- -- -0.122 -- -- -- -- --
403.01 0.939 3.59 -- 0.46 -- -- -- 0.00578 2.63 -- -- -- --
390.54 0.92 3.59 -- -- 0.889 -- -- -0.0522 -- 18.5 38 2.95 6.45
415.39 0.951 3.59 -- -- -- -- -- 0.0152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.80 temperature 10 270 > th dose dependent rect. 24 9
3 313.87 temperature 20 90 > th dose dependent rect. 3 6
8 317.53 temperature 15 10 > th dose dependent rect. 3 7
10 318.22 atmosphere 1005 90 > th dose independent rect. 3 6
14 319.03 atmosphere 1005 10 > th dose independent rect. 3 7
17 319.50 temperature 20 90 > th dose independent rect. 3 6
28 320.41 wind 9 43200 > th dose dependent rect. 18 22
30 320.49 wind 9 43200 > th dose dependent rect. 13 21
31 320.63 temperature 15 90 > th dose dependent rect. 17 16
33 320.69 wind 9 43200 > th dose dependent rect. 8 8
35 320.73 temperature 20 270 > th dose independent rect. 24 9
36 320.79 wind 9 43200 > th dose dependent rect. 9 6
38 320.82 wind 9 43200 > th dose dependent rect. 8 12
42 320.85 wind 9 43200 > th dose dependent sin 23 NA
47 320.91 wind 9 43200 > th dose dependent rect. 22 22
53 320.98 wind 9 43200 > th dose dependent rect. 24 20
54 320.99 wind 9 43200 > th dose dependent rect. 2 18
67 321.07 wind 9 43200 > th dose dependent rect. 22 18
75 321.13 wind 9 43200 > th dose dependent rect. 24 16
77 321.14 wind 9 43200 > th dose dependent rect. 2 14
93 321.23 wind 9 43200 > th dose dependent rect. 6 19
115 321.27 wind 9 43200 > th dose dependent rect. 2 23
125 321.29 wind 9 43200 > th dose dependent no NA NA
167 321.44 wind 9 43200 > th dose independent rect. 6 8
205 321.75 wind 9 43200 > th dose independent rect. 18 20
206 321.79 wind 9 43200 > th dose independent rect. 23 15
232 322.10 wind 9 43200 > th dose independent rect. 2 12
236 322.18 wind 9 43200 < th dose independent rect. 5 9
239 322.31 wind 9 43200 > th dose independent sin 4 NA
242 322.33 humidity 60 4320 < th dose independent rect. 18 2
259 322.40 humidity 60 4320 < th dose dependent rect. 18 1
261 322.50 humidity 60 4320 > th dose independent rect. 18 10
271 322.60 wind 7 43200 > th dose dependent sin 4 NA
276 322.63 humidity 60 4320 > th dose independent rect. 18 2
284 322.68 humidity 60 4320 > th dose independent rect. 18 14
288 322.71 wind 9 43200 < th dose independent rect. 23 15
290 322.72 humidity 50 4320 < th dose dependent rect. 16 1
302 322.83 wind 9 43200 < th dose independent sin 5 NA
319 323.03 wind 9 43200 < th dose independent rect. 18 20
327 323.11 atmosphere 995 90 > th dose dependent rect. 3 6
346 323.29 radiation 30 90 < th dose independent rect. 3 8
397 323.69 temperature 30 4320 > th dose dependent rect. 18 1
446 323.96 temperature 20 270 > th dose independent rect. 14 19
450 323.98 wind 9 43200 > th dose independent rect. 13 22
453 324.01 atmosphere 995 10 > th dose dependent rect. 3 7
487 324.28 humidity 50 4320 < th dose independent rect. 16 1
502 324.40 wind 9 43200 > th dose independent rect. 23 21
505 324.43 humidity 70 90 > th dose independent rect. 3 6
509 324.44 temperature 10 270 > th dose dependent rect. 14 19
524 324.61 temperature 20 90 > th dose independent rect. 17 16
538 324.70 humidity 80 43200 > th dose dependent rect. 8 1
546 324.83 humidity 70 43200 > th dose dependent rect. 7 6
548 324.84 humidity 70 720 < th dose dependent rect. 18 14
551 324.88 wind 9 43200 < th dose independent rect. 13 22
558 324.92 temperature 20 720 > th dose dependent rect. 17 16
564 324.97 wind 9 43200 > th dose independent rect. 5 15
584 325.13 humidity 70 720 < th dose dependent rect. 18 1
600 325.19 radiation 30 10 < th dose independent rect. 3 7
602 325.19 wind 9 43200 > th dose independent rect. 5 22
638 325.33 humidity 90 43200 < th dose independent rect. 4 5
656 325.38 humidity 80 43200 > th dose dependent rect. 5 5
660 325.41 radiation 1 14400 > th dose independent rect. 5 1
662 325.41 temperature 10 90 > th dose dependent rect. 3 19
664 325.43 radiation 1 14400 < th dose independent rect. 24 6
678 325.50 wind 9 43200 > th dose independent no NA NA
679 325.50 radiation 1 14400 < th dose independent rect. 21 9
683 325.51 wind 9 43200 > th dose independent rect. 2 23
687 325.54 radiation 1 14400 < th dose independent rect. 5 1
727 325.66 wind 9 43200 < th dose independent rect. 23 21
730 325.67 humidity 90 43200 > th dose independent rect. 7 1
738 325.73 humidity 90 43200 > th dose independent rect. 4 5
749 325.76 humidity 90 43200 < th dose independent rect. 7 1
794 325.94 humidity 90 43200 > th dose independent rect. 2 14
801 325.98 humidity 90 43200 < th dose independent rect. 3 8
805 326.00 humidity 90 43200 < th dose independent rect. 3 12
860 326.16 humidity 80 43200 > th dose independent rect. 8 4
861 326.17 humidity 80 43200 > th dose independent rect. 7 6
885 326.24 wind 9 43200 < th dose independent rect. 5 15
906 326.29 humidity 70 90 > th dose independent rect. 3 8
923 326.33 radiation 20 10 < th dose independent rect. 3 20
956 326.41 wind 9 43200 < th dose independent rect. 1 19
972 326.49 wind 9 43200 < th dose independent rect. 5 22
977 326.51 wind 9 43200 < th dose independent rect. 5 19