FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0649400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0187) R2 : 0.000408
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.017 (0.0394) R2dN8 : 0.000527 R2N8 : 0.000408
σ : 0.352
deviance : 57.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.59 0.331 2.77 0.0794 0.0935 0.816 0.214 -3.52 0.0415 6.48 96 238 -- --
52.89 0.339 2.77 0.0577 0.0913 1.05 -0.0691 -- 0.0367 6.26 95.98 238 -- --
49.69 0.328 2.77 0.0811 0.0944 0.825 -- -3.35 0.0407 6.62 95.89 233 -- --
52.91 0.339 2.77 0.0564 0.0905 1.05 -- -- 0.0358 6.28 95.91 238 -- --
50.15 0.33 2.77 0.084 -- 0.894 -- -3.33 0.0435 -- 95.84 233 -- --
56.01 0.351 2.78 0.0468 0.134 -- -0.116 -- 0.0191 6.27 -- -- -- --
56.04 0.351 2.78 0.0455 0.133 -- -- -- 0.0196 6.3 -- -- -- --
52.84 0.339 2.77 0.043 -- 1.07 -- -- 0.0547 -- 94.82 232 -- --
52.99 0.339 2.78 -- 0.0916 1.04 -- -- 0.0294 6.25 95.99 238 -- --
56.97 0.353 2.78 0.049 -- -- -- -- 0.0224 -- -- -- -- --
56.1 0.35 2.78 -- 0.134 -- -- -- 0.0145 6.29 -- -- -- --
52.89 0.339 2.77 -- -- 1.07 -- -- 0.0493 -- 94.81 232 -- --
57.03 0.352 2.78 -- -- -- -- -- 0.017 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.74 atmosphere 1005.0 10 < th dose dependent rect. 4 2
15 50.47 precipitation 0.1 270 > th dose independent rect. 2 1
16 50.47 precipitation 0.1 270 > th dose dependent rect. 2 1
18 51.23 humidity 90.0 30 > th dose dependent rect. 5 1
21 51.58 radiation 10.0 43200 < th dose dependent rect. 3 1
34 51.64 wind 9.0 1440 < th dose independent rect. 3 1
35 51.64 temperature 10.0 1440 > th dose independent rect. 3 1
38 51.64 temperature 30.0 1440 < th dose independent rect. 3 1
42 51.64 humidity 50.0 1440 > th dose independent rect. 3 1
51 51.64 atmosphere 995.0 1440 > th dose independent rect. 3 1
52 51.64 radiation 1.0 1440 < th dose independent rect. 3 1
72 51.64 temperature 10.0 1440 > th dose independent rect. 4 23
84 51.78 temperature 20.0 90 > th dose independent rect. 5 1
85 51.83 humidity 90.0 270 > th dose dependent rect. 2 1
127 52.22 humidity 90.0 270 > th dose dependent rect. 1 5
132 52.28 humidity 90.0 10 > th dose independent rect. 5 1
156 52.53 atmosphere 1005.0 90 < th dose independent rect. 4 1
157 52.53 atmosphere 1005.0 10 < th dose independent rect. 4 2
217 52.86 humidity 90.0 270 > th dose independent rect. 2 1
231 52.89 humidity 90.0 10 > th dose dependent sin 1 NA
269 53.02 wind 3.0 30 < th dose independent rect. 5 2
281 53.08 wind 5.0 30 < th dose dependent rect. 5 2
329 53.17 radiation 1.0 10 > th dose dependent rect. 5 2
344 53.18 radiation 1.0 90 < th dose dependent rect. 5 1
445 53.38 radiation 10.0 90 < th dose independent rect. 5 1
453 53.40 atmosphere 1000.0 30 > th dose independent rect. 5 2
472 53.43 precipitation 0.1 30 < th dose independent rect. 5 2
473 53.43 precipitation 0.1 30 < th dose independent rect. 7 22
476 53.43 precipitation 0.1 30 < th dose dependent rect. 5 2
479 53.43 precipitation 0.1 30 < th dose dependent rect. 7 22
480 53.44 wind 1.0 10 > th dose independent rect. 5 2
483 53.44 temperature 10.0 30 > th dose independent rect. 5 2
485 53.44 temperature 30.0 30 < th dose independent rect. 5 2
486 53.44 humidity 50.0 30 > th dose independent rect. 5 2
494 53.44 temperature 10.0 30 > th dose independent rect. 7 22
502 53.45 humidity 50.0 30 > th dose independent rect. 7 22
503 53.45 atmosphere 995.0 30 > th dose independent rect. 7 22
527 53.50 temperature 10.0 90 > th dose dependent rect. 5 1
545 53.52 wind 9.0 30 < th dose independent rect. 7 22
704 53.70 temperature 20.0 270 > th dose independent rect. 2 4
706 53.70 temperature 30.0 30 < th dose independent rect. 7 22
756 53.75 temperature 20.0 10 > th dose independent rect. 3 4
792 53.78 humidity 90.0 30 > th dose dependent rect. 5 23
800 53.79 humidity 90.0 270 > th dose dependent rect. 10 20
811 53.81 wind 9.0 1440 < th dose independent rect. 6 2
812 53.81 temperature 10.0 1440 > th dose independent rect. 6 2
815 53.81 temperature 30.0 1440 < th dose independent rect. 6 2
819 53.81 humidity 50.0 1440 > th dose independent rect. 6 2
824 53.81 atmosphere 995.0 1440 > th dose independent rect. 6 2
825 53.81 atmosphere 1015.0 1440 < th dose independent rect. 6 2
828 53.81 temperature 10.0 1440 > th dose independent rect. 8 22
839 53.82 temperature 30.0 30 < th dose dependent rect. 5 2
877 53.87 wind 3.0 270 < th dose dependent rect. 3 1
885 53.88 wind 1.0 270 < th dose independent rect. 3 2
944 53.92 humidity 90.0 270 < th dose independent rect. 24 10
989 53.97 atmosphere 1015.0 30 < th dose independent rect. 7 22