Os11g0645600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0645600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.32 | 0.33 | 8.16 | 0.136 | 0.641 | 0.473 | 0.181 | 0.0634 | 0.686 | 7.24 | 25.6 | 245 | -- | -- |
| 49.33 | 0.327 | 8.16 | 0.12 | 0.643 | 0.476 | 0.161 | -- | 0.68 | 7.24 | 25.65 | 244 | -- | -- |
| 49.4 | 0.327 | 8.16 | 0.124 | 0.645 | 0.478 | -- | 0.00536 | 0.68 | 7.21 | 25.6 | 244 | -- | -- |
| 49.4 | 0.327 | 8.16 | 0.123 | 0.644 | 0.477 | -- | -- | 0.68 | 7.22 | 25.61 | 244 | -- | -- |
| 62.87 | 0.369 | 8.18 | 0.0152 | -- | 0.482 | -- | -0.288 | 0.693 | -- | 25.77 | 1497 | -- | -- |
| 59.71 | 0.362 | 8.13 | 0.251 | 0.399 | -- | 0.284 | -- | 0.872 | 9.47 | -- | -- | -- | -- |
| 60 | 0.363 | 8.13 | 0.261 | 0.399 | -- | -- | -- | 0.872 | 9.37 | -- | -- | -- | -- |
| 63 | 0.37 | 8.17 | 0.102 | -- | 0.436 | -- | -- | 0.704 | -- | 25.8 | 1494 | -- | -- |
| 49.78 | 0.329 | 8.17 | -- | 0.658 | 0.496 | -- | -- | 0.659 | 7.16 | 25.7 | 244 | -- | -- |
| 69.31 | 0.389 | 8.14 | 0.258 | -- | -- | -- | -- | 0.873 | -- | -- | -- | -- | -- |
| 61.79 | 0.368 | 8.13 | -- | 0.399 | -- | -- | -- | 0.843 | 9.32 | -- | -- | -- | -- |
| 63.19 | 0.37 | 8.18 | -- | -- | 0.49 | -- | -- | 0.702 | -- | 25.76 | 1516 | -- | -- |
| 71.07 | 0.393 | 8.14 | -- | -- | -- | -- | -- | 0.845 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 3 | 45.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 4 |
| 4 | 45.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 9 | 46.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 18 | 46.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 21 | 46.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 34 | 47.12 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 15 |
| 36 | 47.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 15 |
| 41 | 47.19 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 52 | 47.33 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 15 |
| 63 | 47.45 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 13 |
| 84 | 47.68 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 88 | 47.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 107 | 47.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 114 | 47.89 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 13 |
| 120 | 47.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 134 | 48.01 | temperature | 25 | 10 | < th | dose dependent | sin | 18 | NA |
| 146 | 48.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 20 |
| 153 | 48.09 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 157 | 48.10 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 181 | 48.20 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 11 |
| 196 | 48.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 347 | 48.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 367 | 48.73 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 391 | 48.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 407 | 48.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 432 | 48.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 434 | 48.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 466 | 48.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 497 | 49.03 | temperature | 25 | 90 | < th | dose independent | sin | 19 | NA |
| 525 | 49.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 653 | 49.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 711 | 49.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 717 | 49.44 | temperature | 25 | 90 | > th | dose independent | sin | 19 | NA |
| 738 | 49.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 772 | 49.53 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |
| 791 | 49.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 839 | 49.64 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 22 |
| 888 | 49.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 891 | 49.73 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 922 | 49.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 996 | 49.88 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 19 |