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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0644100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0293) R2 : 0.00142
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0497 (0.0618) R2dN8 : 0.00183 R2N8 : 0.00142
σ : 0.552
deviance : 140.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.18 0.511 2.92 -0.0425 0.0222 2.21 0.382 -7.34 0.0687 9.76 0.8181 10 8.24 13.8
127.44 0.526 2.93 -0.075 0.0847 2.08 0.486 -- 0.0442 9.6 0.6235 8 8.68 15.2
117.61 0.505 2.93 -0.104 0.0512 1.71 -- -5.05 0.0456 8.73 0.6067 9 9.52 12.5
128.09 0.527 2.93 -0.077 0.0637 2.01 -- -- 0.0447 8.82 0.6251 8 9.22 12.8
117.27 0.504 2.92 -0.0133 -- 1.68 -- -5.14 0.0709 -- 0.561 9 9.49 14.4
139.66 0.554 2.92 -0.0766 0.0461 -- 0.216 -- 0.0417 10.1 -- -- -- --
139.84 0.554 2.92 -0.0686 0.0475 -- -- -- 0.0418 9.12 -- -- -- --
128.34 0.528 2.92 -0.0626 -- 2.02 -- -- 0.0633 -- 0.6264 8 8.98 13.2
128.16 0.527 2.92 -- 0.0803 2.02 -- -- 0.0589 9.19 0.6232 8 8.14 14.1
139.97 0.553 2.92 -0.0687 -- -- -- -- 0.0421 -- -- -- -- --
139.96 0.553 2.92 -- 0.0475 -- -- -- 0.0495 9.23 -- -- -- --
128.45 0.528 2.92 -- -- 2.02 -- -- 0.0702 -- 0.6259 8 9.02 14
140.09 0.552 2.92 -- -- -- -- -- 0.0497 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.66 wind 1 10 < th dose dependent rect. 8 15
4 121.74 radiation 40 10 > th dose dependent rect. 14 20
5 121.80 radiation 40 10 > th dose dependent rect. 9 1
47 122.35 radiation 40 10 > th dose independent rect. 9 1
67 122.46 humidity 60 10 < th dose independent rect. 10 1
69 122.46 humidity 60 10 < th dose dependent rect. 10 1
213 122.80 wind 1 10 < th dose independent rect. 8 15
244 123.43 humidity 60 1440 > th dose independent rect. 6 3
245 123.43 humidity 60 1440 > th dose independent rect. 23 10
246 123.46 humidity 60 4320 < th dose independent rect. 8 1
260 123.49 humidity 60 1440 > th dose independent rect. 8 1
265 123.50 humidity 60 1440 > th dose independent rect. 4 5
282 123.50 humidity 60 90 < th dose dependent rect. 17 17
304 123.55 humidity 60 30 < th dose independent rect. 17 17
307 123.56 wind 1 10 < th dose dependent rect. 9 3
322 123.57 humidity 60 4320 < th dose dependent rect. 8 1
337 123.59 wind 1 10 < th dose dependent rect. 7 3
470 123.73 wind 1 10 < th dose independent rect. 9 3
480 123.79 wind 1 10 < th dose independent rect. 6 4
501 123.82 humidity 60 1440 > th dose independent rect. 2 7
513 123.91 wind 1 10 > th dose independent sin 20 NA
532 123.98 wind 1 10 < th dose dependent sin 21 NA
556 124.17 wind 1 10 < th dose dependent rect. 8 10
572 124.24 radiation 40 10 > th dose independent sin 11 NA
600 124.32 radiation 40 10 > th dose dependent sin 11 NA
646 124.63 humidity 60 1440 > th dose independent rect. 20 13
720 125.38 wind 1 10 < th dose independent sin 21 NA