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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0643600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.0389) R2 : 0.252
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.977 (0.099) R2dC : 0.16 R2C : 0.141
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.594 (0.082) R2dN8 : 0.111 R2N8 : 0.0924
σ : 0.735
deviance : 246.55
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.53 0.702 5.64 0.311 0.8 -0.571 -1.67 -0.288 -0.566 17.4 20.77 23 -- --
223.86 0.697 5.64 0.306 0.798 -0.591 -1.64 -- -0.567 17.6 20.74 23 -- --
230.36 0.707 5.64 0.325 0.792 -0.578 -- -0.135 -0.574 17.4 20.76 23 -- --
230.44 0.707 5.65 0.321 0.789 -0.581 -- -- -0.575 17.4 20.77 23 -- --
262.18 0.754 5.64 0.29 -- -0.619 -- -0.0474 -0.546 -- 20.55 19 -- --
238.72 0.724 5.63 0.397 0.995 -- -1.22 -- -0.544 16.1 -- -- -- --
242.68 0.73 5.63 0.383 0.984 -- -- -- -0.551 15.8 -- -- -- --
258.69 0.749 5.64 0.301 -- -0.701 -- -- -0.611 -- 15.33 68 -- --
233.2 0.711 5.65 -- 0.778 -0.605 -- -- -0.595 17.5 20.77 23 -- --
296.13 0.804 5.63 0.342 -- -- -- -- -0.578 -- -- -- -- --
246.55 0.735 5.64 -- 0.977 -- -- -- -0.594 15.8 -- -- -- --
252.78 0.74 5.66 -- -- -0.756 -- -- -0.675 -- 7.24 337 -- --
299.22 0.807 5.64 -- -- -- -- -- -0.616 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.48 wind 1.0 270 > th dose dependent rect. 4 1
2 219.62 humidity 80.0 30 < th dose independent rect. 9 6
3 219.90 humidity 80.0 30 < th dose independent rect. 9 8
4 219.91 wind 1.0 270 > th dose dependent rect. 3 4
5 220.03 humidity 70.0 10 > th dose dependent rect. 6 9
6 220.15 humidity 80.0 30 < th dose independent rect. 9 4
16 221.21 radiation 20.0 30 > th dose independent rect. 9 6
20 221.47 temperature 25.0 720 < th dose independent rect. 8 1
21 221.67 radiation 20.0 30 > th dose independent rect. 9 4
24 221.80 humidity 90.0 10 < th dose dependent rect. 9 4
25 221.90 humidity 90.0 10 < th dose dependent rect. 7 6
27 221.96 humidity 80.0 30 < th dose independent sin 1 NA
33 222.17 humidity 80.0 30 < th dose independent rect. 7 8
42 222.48 radiation 20.0 10 > th dose independent sin 4 NA
43 222.49 radiation 20.0 30 > th dose independent sin 2 NA
44 222.53 humidity 80.0 270 < th dose independent rect. 9 1
64 222.66 radiation 20.0 10 < th dose independent rect. 17 22
69 222.80 humidity 80.0 30 < th dose independent rect. 4 11
72 222.84 radiation 20.0 10 < th dose independent sin 6 NA
77 222.92 humidity 50.0 14400 > th dose dependent rect. 4 1
81 222.97 radiation 10.0 10 < th dose independent rect. 6 4
108 223.06 humidity 80.0 30 < th dose independent rect. 7 6
115 223.12 radiation 20.0 30 < th dose independent rect. 21 23
117 223.13 humidity 80.0 30 > th dose independent rect. 6 9
118 223.13 humidity 90.0 14400 < th dose dependent rect. 2 3
128 223.28 humidity 90.0 10 < th dose dependent rect. 7 8
132 223.33 temperature 25.0 720 > th dose dependent rect. 7 7
144 223.41 wind 1.0 43200 > th dose independent rect. 16 12
156 223.41 humidity 90.0 10 < th dose dependent rect. 9 6
164 223.47 temperature 25.0 720 > th dose dependent sin 4 NA
169 223.54 humidity 80.0 270 < th dose independent rect. 7 5
170 223.54 temperature 25.0 720 < th dose independent rect. 5 8
176 223.57 radiation 20.0 30 < th dose independent rect. 1 23
181 223.59 humidity 90.0 30 < th dose dependent rect. 22 15
188 223.64 temperature 25.0 720 > th dose independent rect. 6 7
211 223.68 temperature 25.0 720 < th dose independent rect. 7 4
213 223.68 humidity 90.0 10 < th dose dependent rect. 3 10
214 223.69 temperature 25.0 720 > th dose independent rect. 4 9
244 223.74 temperature 25.0 720 < th dose dependent rect. 4 8
245 223.74 radiation 20.0 10 < th dose dependent rect. 6 8
259 223.84 humidity 90.0 10 < th dose dependent sin 3 NA
270 223.87 humidity 70.0 10 > th dose independent sin 6 NA
323 223.95 wind 1.0 43200 < th dose independent rect. 16 12
332 223.99 wind 1.0 10 > th dose dependent rect. 4 5
380 224.14 precipitation 0.1 270 > th dose independent rect. 20 13
393 224.20 radiation 20.0 30 < th dose independent rect. 11 23
401 224.23 radiation 20.0 30 < th dose independent rect. 13 23
402 224.24 radiation 20.0 30 < th dose independent no NA NA
428 224.29 precipitation 0.1 270 < th dose independent sin 8 NA
432 224.29 precipitation 0.1 270 < th dose dependent sin 8 NA
447 224.35 radiation 20.0 90 < th dose dependent rect. 5 9
448 224.36 radiation 20.0 30 > th dose independent no NA NA
560 224.38 radiation 20.0 30 > th dose independent rect. 14 23
571 224.42 humidity 90.0 10 < th dose dependent rect. 20 17
573 224.43 radiation 20.0 10 < th dose dependent rect. 6 3
578 224.46 wind 3.0 270 > th dose independent rect. 3 4
590 224.48 temperature 25.0 720 < th dose dependent rect. 1 11
605 224.53 humidity 80.0 14400 < th dose independent rect. 3 1
609 224.56 humidity 80.0 14400 > th dose independent rect. 3 1
614 224.56 temperature 25.0 720 > th dose independent rect. 24 13
615 224.56 radiation 20.0 30 < th dose independent rect. 5 23
624 224.60 radiation 20.0 30 < th dose independent rect. 23 23
650 224.66 radiation 20.0 10 < th dose independent rect. 5 10
654 224.67 humidity 90.0 270 < th dose dependent rect. 9 1
665 224.71 wind 1.0 43200 < th dose independent sin 15 NA
672 224.72 humidity 70.0 10 > th dose dependent rect. 6 6
686 224.74 temperature 25.0 270 < th dose dependent rect. 7 7
697 224.77 humidity 80.0 270 > th dose independent rect. 2 12
699 224.77 radiation 20.0 30 < th dose independent rect. 6 16
759 224.89 wind 1.0 43200 > th dose independent sin 14 NA
901 225.10 wind 3.0 14400 < th dose dependent rect. 21 2
906 225.12 temperature 25.0 720 > th dose independent sin 4 NA