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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0641800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0627) R2 : 0.238
β1 : -2.36 (0.23) R2dD : 0.185 R2D : 0.118
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.836 (0.143) R2dE : 0.0588 R2E : 0.0166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.778 (0.135) R2dN8 : 0.0761 R2N8 : 0.00322
σ : 1.17
deviance : 631.58
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 85
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.25
open length of G : 6.43

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
601.24 1.15 3.72 -2.49 0.364 0.996 -2.19 -2.45 -0.848 14.7 1005 87 3.22 5.93
612.98 1.15 3.66 -2.29 0.349 0.901 -1.94 -- -0.737 13.6 1004 93 3.09 6.28
616.31 1.16 3.72 -2.49 0.359 0.996 -- -1.72 -0.825 15 1005 88 3.18 6.33
624.78 1.16 3.7 -2.37 0.391 0.98 -- -- -0.779 15 1005 89 3.12 6.31
622.44 1.16 3.73 -2.46 -- 0.879 -- -1.87 -0.814 -- 1005 79 3.44 6.27
649.02 1.19 3.66 -2.2 0.553 -- -1.74 -- -0.66 9.69 -- -- -- --
658.53 1.2 3.66 -2.27 0.608 -- -- -- -0.668 8.48 -- -- -- --
631.58 1.17 3.7 -2.36 -- 0.836 -- -- -0.778 -- 1005 85 3.25 6.43
771.21 1.29 3.64 -- 0.396 0.843 -- -- -0.516 14.4 1004 106 2.83 6.43
679.18 1.22 3.67 -2.27 -- -- -- -- -0.662 -- -- -- -- --
794.83 1.32 3.6 -- 0.6 -- -- -- -0.415 8.76 -- -- -- --
778.42 1.3 3.65 -- -- 0.742 -- -- -0.537 -- 1005 68 3.55 6.22
815.26 1.33 3.62 -- -- -- -- -- -0.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 606.28 wind 1 270 > th dose dependent rect. 3 6
4 609.03 atmosphere 1005 90 > th dose independent rect. 3 6
10 610.60 atmosphere 1005 10 > th dose independent rect. 4 6
11 610.91 wind 3 270 > th dose independent rect. 3 7
13 611.19 wind 1 270 > th dose dependent rect. 7 1
18 611.86 wind 3 720 < th dose independent rect. 8 2
24 612.70 wind 3 270 > th dose independent rect. 7 1
25 612.81 wind 5 720 < th dose dependent rect. 8 2
27 612.92 wind 3 10 > th dose independent rect. 5 7
39 613.72 atmosphere 1005 720 < th dose dependent rect. 10 1
74 616.25 atmosphere 1005 90 < th dose dependent rect. 10 12
88 617.06 wind 9 270 < th dose dependent rect. 22 15
129 618.50 wind 3 30 < th dose dependent rect. 24 12
131 618.51 atmosphere 1000 270 > th dose dependent rect. 2 6
136 618.76 wind 3 30 < th dose dependent rect. 2 10
151 619.05 atmosphere 1000 10 > th dose dependent rect. 4 6
166 619.37 wind 7 270 < th dose dependent rect. 22 13
169 619.41 atmosphere 1005 270 > th dose dependent rect. 4 2
173 619.52 wind 3 30 < th dose dependent sin 4 NA
176 619.53 atmosphere 1015 1440 > th dose dependent rect. 3 9
178 619.58 wind 3 270 > th dose independent rect. 4 17
181 619.63 atmosphere 1010 90 < th dose independent rect. 9 18
184 619.66 wind 3 270 < th dose independent rect. 22 14
206 619.81 atmosphere 1005 270 < th dose dependent rect. 8 7
267 620.78 atmosphere 1010 90 < th dose independent rect. 23 15
300 621.39 radiation 30 30 < th dose independent rect. 10 18
301 621.40 atmosphere 1010 90 < th dose independent rect. 9 11
307 621.45 atmosphere 1005 10 < th dose dependent rect. 11 5
311 621.47 atmosphere 1010 90 < th dose independent rect. 9 8
352 621.92 wind 1 10 > th dose dependent rect. 6 4
356 621.95 wind 3 30 < th dose independent rect. 23 14
357 621.95 wind 1 10 > th dose dependent rect. 5 7
361 622.00 atmosphere 1015 1440 > th dose independent rect. 3 9
451 622.83 radiation 40 720 > th dose dependent rect. 11 1
453 622.85 atmosphere 1005 720 < th dose independent rect. 10 1
478 623.10 wind 7 30 > th dose dependent rect. 7 3
520 623.42 radiation 20 4320 > th dose independent rect. 16 16
559 623.69 atmosphere 1015 1440 < th dose independent rect. 3 9
582 623.84 wind 3 30 < th dose independent rect. 1 12
587 623.89 temperature 25 270 > th dose independent rect. 10 1
599 623.94 atmosphere 1005 270 > th dose independent rect. 9 5
618 624.01 atmosphere 995 4320 > th dose independent rect. 3 3
628 624.07 humidity 70 4320 < th dose independent rect. 19 2
645 624.13 atmosphere 1015 1440 < th dose independent rect. 10 2
671 624.38 atmosphere 1005 270 < th dose independent rect. 3 4
683 624.43 radiation 40 4320 > th dose dependent rect. 11 1
726 624.72 atmosphere 1015 1440 < th dose independent rect. 6 6
730 624.74 atmosphere 1015 1440 > th dose independent rect. 10 1
745 624.74 atmosphere 1015 1440 > th dose dependent rect. 10 1
766 624.77 radiation 40 1440 < th dose independent rect. 11 1
783 624.87 temperature 30 4320 > th dose dependent rect. 18 1
798 624.88 atmosphere 1005 270 < th dose independent rect. 5 1
814 624.96 radiation 1 90 < th dose dependent rect. 23 17
815 624.97 wind 3 270 > th dose independent sin 5 NA
820 625.00 atmosphere 1005 270 < th dose independent rect. 23 8
828 625.03 humidity 70 4320 < th dose dependent rect. 18 3
875 625.20 wind 3 270 < th dose independent sin 6 NA
883 625.25 atmosphere 1005 10 < th dose independent rect. 4 5
896 625.32 atmosphere 995 4320 > th dose independent rect. 3 8
900 625.35 atmosphere 1005 90 < th dose dependent sin 21 NA
912 625.40 atmosphere 1005 90 > th dose independent rect. 20 13
941 625.57 temperature 15 270 > th dose independent rect. 9 17
945 625.58 radiation 40 30 < th dose dependent rect. 10 18
950 625.61 atmosphere 1010 90 < th dose dependent rect. 23 11
954 625.65 radiation 40 1440 > th dose independent rect. 11 1
955 625.66 wind 5 720 < th dose independent rect. 5 6
980 625.77 wind 7 10 > th dose dependent rect. 9 2