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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0641500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.033) R2 : 0.191
β1 : 1.4 (0.145) R2dD : 0.268 R2D : -0.0416
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.48 (0.169) R2dE : 0.243 R2E : -0.0974
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.355 (0.0785) R2dN8 : 0.0652 R2N8 : -0.0687
σ : 0.594
deviance : 162.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23
memory length : 5121
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.82 0.586 3.51 1.24 0.163 3.77 -0.119 5.96 0.219 10.5 19.42 4250 -- --
162.29 0.593 3.35 1.25 0.108 1.45 0.458 -- 0.363 14.6 22.55 3618 -- --
155.65 0.581 3.52 1.25 0.159 4.25 -- 6.91 0.2 11.4 18.87 4228 -- --
161.34 0.592 3.34 1.41 0.139 1.49 -- -- 0.368 12.1 23.09 5056 -- --
156.84 0.583 3.53 1.19 -- 4.14 -- 6.82 0.188 -- 18.76 3937 -- --
188.08 0.643 3.42 0.637 0.18 -- 0.0534 -- 0.0089 12.4 -- -- -- --
188.09 0.642 3.42 0.639 0.18 -- -- -- 0.00897 12.2 -- -- -- --
162.54 0.594 3.34 1.4 -- 1.48 -- -- 0.355 -- 23 5121 -- --
190.35 0.643 3.41 -- 0.146 0.682 -- -- 0.0387 12.1 55.69 1737 -- --
190.14 0.644 3.42 0.633 -- -- -- -- 0.00626 -- -- -- -- --
198.85 0.66 3.44 -- 0.172 -- -- -- -0.0622 12 -- -- -- --
191.18 0.644 3.42 -- -- 0.645 -- -- 0.0386 -- 63.85 2238 -- --
200.71 0.661 3.44 -- -- -- -- -- -0.064 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.36 wind 1 43200 < th dose dependent rect. 6 2
2 143.94 humidity 60 43200 > th dose dependent rect. 5 1
7 144.33 wind 1 43200 < th dose dependent rect. 4 21
31 145.40 wind 1 43200 > th dose independent rect. 14 1
36 145.46 wind 1 43200 < th dose dependent rect. 6 9
41 145.57 wind 1 43200 < th dose dependent rect. 6 5
42 145.60 atmosphere 1010 43200 < th dose independent rect. 13 1
47 145.74 atmosphere 1010 43200 > th dose independent rect. 12 1
56 145.84 atmosphere 1015 43200 < th dose independent rect. 19 3
58 145.85 wind 3 43200 < th dose dependent rect. 13 1
60 145.86 humidity 80 43200 > th dose independent rect. 16 9
62 145.88 atmosphere 1015 43200 > th dose independent rect. 21 1
63 145.88 atmosphere 1010 43200 > th dose dependent rect. 9 1
67 145.89 wind 3 43200 < th dose dependent rect. 11 5
69 145.90 humidity 90 43200 < th dose dependent rect. 6 1
71 145.91 wind 1 43200 > th dose independent rect. 5 20
75 145.95 humidity 80 43200 > th dose independent rect. 17 7
79 145.96 atmosphere 1015 43200 < th dose independent rect. 21 1
96 146.02 wind 1 14400 < th dose dependent rect. 13 19
104 146.08 wind 1 14400 < th dose dependent rect. 10 22
121 146.14 wind 1 43200 > th dose independent rect. 20 20
125 146.15 wind 1 43200 > th dose independent rect. 18 21
127 146.16 wind 5 43200 < th dose independent rect. 24 1
134 146.17 wind 1 43200 < th dose dependent rect. 4 11
140 146.19 wind 3 43200 > th dose dependent rect. 17 2
147 146.21 wind 1 43200 < th dose independent rect. 4 21
152 146.23 atmosphere 1010 43200 > th dose dependent rect. 8 9
154 146.25 wind 5 43200 > th dose independent rect. 24 1
161 146.25 atmosphere 1010 43200 > th dose dependent rect. 6 11
174 146.29 humidity 60 43200 > th dose dependent rect. 24 1
184 146.31 atmosphere 1010 43200 > th dose dependent rect. 6 1
204 146.34 wind 7 43200 < th dose dependent rect. 17 1
217 146.36 atmosphere 1010 43200 > th dose dependent sin 2 NA
254 146.41 wind 1 43200 < th dose dependent rect. 19 22
255 146.42 humidity 80 43200 > th dose independent rect. 16 19
277 146.44 atmosphere 1010 43200 > th dose dependent rect. 16 1
308 146.49 humidity 80 43200 < th dose independent rect. 16 8
310 146.49 humidity 70 43200 > th dose dependent rect. 19 4
354 146.57 humidity 70 43200 > th dose dependent rect. 19 13
369 146.59 wind 1 43200 > th dose independent rect. 10 23
439 146.68 humidity 80 43200 > th dose independent sin 15 NA
503 146.75 wind 5 43200 < th dose independent rect. 17 2
521 146.77 wind 3 43200 < th dose independent rect. 11 8
536 146.78 wind 1 43200 < th dose dependent no NA NA
541 146.78 wind 1 43200 < th dose dependent rect. 15 23
547 146.79 wind 1 14400 < th dose independent rect. 10 22
567 146.81 humidity 80 43200 < th dose independent rect. 15 18
568 146.81 humidity 80 43200 < th dose independent rect. 15 20
580 146.81 atmosphere 1010 43200 > th dose dependent rect. 16 21
618 146.83 atmosphere 1010 43200 > th dose dependent no NA NA
633 146.84 wind 1 14400 < th dose independent rect. 12 20
660 146.85 atmosphere 1010 43200 > th dose dependent rect. 8 23
694 146.88 wind 3 43200 < th dose independent rect. 11 5
728 146.90 wind 1 43200 < th dose independent rect. 19 21
850 147.00 atmosphere 1015 43200 < th dose independent rect. 19 14
862 147.01 humidity 70 43200 > th dose dependent rect. 20 1
866 147.02 humidity 80 43200 < th dose independent sin 15 NA
872 147.02 atmosphere 1010 43200 > th dose dependent rect. 2 1
903 147.05 wind 3 43200 > th dose independent rect. 11 8
920 147.06 atmosphere 1015 43200 < th dose independent rect. 6 18
944 147.08 atmosphere 1015 43200 < th dose independent rect. 6 1
968 147.10 atmosphere 1015 43200 < th dose independent rect. 19 20