Os11g0640600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os11g0640600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 387.32 | 0.925 | 5.96 | 4.72 | 3.02 | -5.05 | -0.909 | 5.71 | 1.33 | 12.6 | 10.22 | 703 | 21.1 | 16.2 |
| 428.85 | 0.965 | 6 | 4.56 | 2.73 | -4.93 | -0.28 | -- | 1.26 | 12.5 | 10.99 | 688 | 21 | 16.6 |
| 389.76 | 0.919 | 5.98 | 4.65 | 3.01 | -5.1 | -- | 5.37 | 1.29 | 12.7 | 10.09 | 693 | 21.1 | 16.4 |
| 412.22 | 0.946 | 6.01 | 4.04 | 2.76 | -4.97 | -- | -- | 1.26 | 13.1 | 11.31 | 705 | 21.2 | 16.6 |
| 446.34 | 0.984 | 5.97 | 4.84 | -- | -3.27 | -- | 3.8 | 1.44 | -- | 15.81 | 1402 | 20.1 | 18.9 |
| 607.45 | 1.16 | 6.25 | 3.02 | 0.674 | -- | 0.216 | -- | 0.457 | 15.5 | -- | -- | -- | -- |
| 607.56 | 1.15 | 6.25 | 3.02 | 0.678 | -- | -- | -- | 0.458 | 15.7 | -- | -- | -- | -- |
| 447.44 | 0.985 | 6.11 | 4.56 | -- | -3.2 | -- | -- | 1.12 | -- | -26.11 | 4356 | 19 | 19.2 |
| 776.53 | 1.3 | 6.23 | -- | 2.58 | -3.27 | -- | -- | 0.455 | 13.3 | 2.908 | 636 | 22.4 | 16.1 |
| 633.03 | 1.18 | 6.25 | 2.99 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 848.04 | 1.36 | 6.33 | -- | 0.618 | -- | -- | -- | 0.122 | 15.7 | -- | -- | -- | -- |
| 809.56 | 1.33 | 6.27 | -- | -- | -1.76 | -- | -- | 0.36 | -- | -29.73 | 1152 | 22.5 | 24 |
| 869.21 | 1.38 | 6.32 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 388.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 3 | 391.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 8 | 393.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 14 | 396.16 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 31 | 398.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 58 | 402.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 64 | 403.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 74 | 403.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 137 | 408.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 145 | 408.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 146 | 408.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 160 | 409.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 177 | 409.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 185 | 410.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 194 | 410.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 211 | 411.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 214 | 411.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 225 | 411.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 229 | 411.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 237 | 411.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 244 | 412.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 255 | 412.74 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 261 | 412.86 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 272 | 413.13 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 280 | 413.37 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 296 | 413.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 322 | 414.39 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 394 | 416.71 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 398 | 416.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 460 | 418.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 474 | 418.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 512 | 419.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 556 | 420.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 640 | 422.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 665 | 422.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 674 | 422.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 17 |