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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0640300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.94 (0.0233) R2 : 0.953
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -4.72 (0.0491) R2dN8 : 1.23 R2N8 : 0.953
σ : 0.44
deviance : 88.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.47 0.4 7.84 0.281 0.331 -0.0926 0.0357 2.46 -4.57 4.01 17.1 4549 -- --
76.63 0.411 7.93 -0.328 0.226 -0.439 -0.0413 -- -4.71 4.91 9.456 23674 -- --
72.47 0.396 7.84 0.282 0.331 -0.0944 -- 2.46 -4.57 4.01 17.2 4501 -- --
76.63 0.41 7.93 -0.329 0.226 -0.436 -- -- -4.71 4.9 9.456 23674 -- --
77.64 0.413 7.91 -0.121 -- -0.577 -- 1.07 -4.63 -- 17.44 5340 -- --
78.45 0.415 7.95 -0.413 0.332 -- 0.0515 -- -4.77 3.99 -- -- -- --
78.46 0.415 7.95 -0.413 0.332 -- -- -- -4.77 3.99 -- -- -- --
78.8 0.415 7.93 -0.286 -- -0.629 -- -- -4.68 -- 9.456 23674 -- --
79.22 0.417 7.92 -- 0.188 -0.595 -- -- -4.65 5.52 -9.478 40867 -- --
84.49 0.43 7.95 -0.4 -- -- -- -- -4.76 -- -- -- -- --
82.97 0.426 7.94 -- 0.324 -- -- -- -4.72 4.01 -- -- -- --
80.83 0.42 7.92 -- -- -0.718 -- -- -4.64 -- 9.456 23674 -- --
88.71 0.44 7.94 -- -- -- -- -- -4.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.70 radiation 1.0 14400 < th dose dependent rect. 3 1
2 70.14 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 70.38 humidity 80.0 30 > th dose dependent rect. 2 1
6 70.41 humidity 90.0 30 > th dose independent rect. 2 1
7 70.41 temperature 20.0 30 > th dose dependent rect. 2 1
10 70.47 atmosphere 1000.0 30 > th dose independent rect. 2 1
14 70.49 wind 5.0 30 < th dose independent rect. 2 1
16 70.49 temperature 20.0 30 > th dose independent rect. 2 1
18 70.50 wind 5.0 30 < th dose dependent rect. 2 1
26 70.56 temperature 10.0 30 > th dose independent rect. 2 1
28 70.56 temperature 30.0 30 < th dose independent rect. 2 1
29 70.56 humidity 50.0 30 > th dose independent rect. 2 1
33 70.56 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 70.56 radiation 1.0 30 < th dose independent rect. 2 1
40 70.56 precipitation 0.1 30 < th dose independent rect. 2 1
41 70.56 temperature 10.0 30 > th dose independent rect. 3 23
42 70.56 radiation 1.0 30 < th dose dependent rect. 2 1
47 70.56 precipitation 0.1 30 < th dose dependent rect. 2 1
49 70.60 temperature 10.0 30 > th dose dependent rect. 3 23
61 70.76 wind 9.0 1440 < th dose independent rect. 3 1
62 70.76 temperature 10.0 1440 > th dose independent rect. 3 1
65 70.76 temperature 30.0 1440 < th dose independent rect. 3 1
69 70.76 humidity 50.0 1440 > th dose independent rect. 3 1
78 70.76 atmosphere 995.0 1440 > th dose independent rect. 3 1
79 70.76 radiation 1.0 1440 < th dose independent rect. 3 1
99 70.76 temperature 10.0 1440 > th dose independent rect. 4 23
109 70.77 wind 9.0 30 < th dose independent rect. 3 23
111 70.84 temperature 30.0 30 < th dose dependent rect. 2 1
112 70.90 atmosphere 1015.0 30 < th dose dependent rect. 2 1
113 70.92 wind 1.0 30 > th dose independent rect. 2 1
115 71.04 wind 3.0 43200 < th dose independent rect. 13 1
117 71.07 wind 3.0 43200 > th dose independent rect. 13 1
119 71.13 atmosphere 1000.0 30 > th dose independent rect. 3 23
121 71.20 humidity 70.0 43200 > th dose independent rect. 18 8
125 71.21 wind 5.0 43200 < th dose dependent rect. 13 1
128 71.23 humidity 90.0 43200 < th dose dependent rect. 20 1
131 71.26 humidity 70.0 43200 > th dose independent rect. 16 10
132 71.27 temperature 25.0 43200 < th dose independent rect. 14 3
136 71.28 temperature 25.0 43200 < th dose independent rect. 16 1
138 71.28 temperature 25.0 43200 > th dose independent rect. 14 3
140 71.28 temperature 25.0 43200 < th dose independent rect. 8 9
146 71.29 humidity 80.0 43200 > th dose dependent rect. 10 7
147 71.30 humidity 70.0 43200 > th dose independent sin 14 NA
150 71.30 temperature 25.0 43200 > th dose independent rect. 14 1
152 71.30 precipitation 0.1 43200 < th dose independent rect. 5 1
162 71.30 precipitation 0.1 43200 < th dose dependent rect. 5 1
170 71.31 temperature 25.0 43200 > th dose independent rect. 8 9
173 71.31 humidity 90.0 43200 < th dose independent rect. 9 11
175 71.31 humidity 60.0 43200 > th dose dependent rect. 20 1
197 71.33 humidity 80.0 43200 > th dose dependent rect. 11 4
199 71.34 humidity 70.0 43200 < th dose independent sin 14 NA
251 71.36 humidity 70.0 43200 < th dose independent rect. 15 11
255 71.36 humidity 70.0 43200 > th dose independent rect. 14 20
272 71.37 humidity 90.0 43200 > th dose independent rect. 9 10
295 71.39 precipitation 0.1 43200 > th dose independent rect. 5 1
300 71.39 humidity 70.0 43200 < th dose independent rect. 18 9
318 71.39 precipitation 0.1 43200 > th dose dependent rect. 5 1
319 71.39 humidity 90.0 43200 < th dose dependent rect. 19 3
362 71.42 temperature 25.0 43200 < th dose independent sin 22 NA
365 71.42 humidity 90.0 43200 > th dose independent rect. 16 1
417 71.44 humidity 70.0 43200 > th dose independent rect. 8 22
440 71.46 temperature 25.0 43200 > th dose independent sin 22 NA
443 71.46 humidity 90.0 43200 < th dose independent rect. 16 1
467 71.46 humidity 70.0 43200 < th dose independent rect. 13 20
470 71.46 humidity 90.0 43200 < th dose dependent rect. 11 1
492 71.47 humidity 70.0 43200 > th dose independent rect. 18 21
496 71.47 humidity 70.0 43200 > th dose independent rect. 10 23
502 71.47 humidity 80.0 43200 > th dose dependent rect. 9 2
510 71.48 humidity 70.0 43200 > th dose independent no NA NA
532 71.48 humidity 70.0 43200 > th dose independent rect. 4 23
535 71.48 temperature 15.0 43200 > th dose dependent rect. 9 1
536 71.48 temperature 15.0 43200 > th dose dependent rect. 20 1
538 71.48 humidity 90.0 43200 < th dose dependent rect. 8 4
540 71.48 humidity 80.0 43200 < th dose dependent rect. 17 8
556 71.49 humidity 70.0 43200 > th dose independent rect. 10 17
572 71.49 wind 3.0 43200 < th dose dependent rect. 20 1
599 71.50 humidity 80.0 43200 < th dose dependent sin 15 NA
601 71.50 temperature 20.0 43200 > th dose dependent rect. 11 1
640 71.51 humidity 70.0 43200 > th dose independent rect. 23 23
646 71.51 temperature 15.0 43200 > th dose dependent rect. 14 1
661 71.51 humidity 80.0 43200 < th dose dependent rect. 18 5
702 71.52 temperature 30.0 43200 < th dose dependent rect. 9 1
740 71.52 temperature 15.0 43200 > th dose dependent rect. 9 14
747 71.52 humidity 80.0 43200 < th dose dependent rect. 11 17
758 71.53 humidity 90.0 43200 < th dose independent rect. 9 1
760 71.53 atmosphere 1005.0 43200 < th dose independent rect. 16 2
763 71.53 humidity 90.0 43200 < th dose independent rect. 15 5
782 71.53 temperature 15.0 43200 > th dose dependent sin 20 NA
837 71.53 temperature 15.0 43200 > th dose dependent rect. 12 11
844 71.53 temperature 15.0 43200 > th dose dependent rect. 9 12
882 71.53 temperature 15.0 43200 > th dose dependent rect. 20 19
896 71.53 humidity 90.0 43200 < th dose dependent rect. 17 20
916 71.54 atmosphere 1005.0 43200 > th dose independent rect. 16 2
935 71.54 temperature 15.0 43200 > th dose dependent sin 17 NA
940 71.54 temperature 15.0 43200 > th dose dependent no NA NA
968 71.54 temperature 15.0 43200 > th dose dependent rect. 13 9