Os11g0640000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os11g0640000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.56 | 0.487 | 4.05 | 1.09 | 0.438 | 1.35 | 1.76 | 1.67 | -0.892 | 18 | 11.27 | 37 | -- | -- |
| 108.51 | 0.485 | 4.07 | 0.889 | 0.401 | 1.12 | 1.89 | -- | -0.94 | 17.7 | 19.1 | 60 | -- | -- |
| 114.38 | 0.498 | 4.04 | 1.13 | 0.406 | 1.46 | -- | 2.33 | -0.88 | 18.7 | 14.45 | 60 | -- | -- |
| 117.81 | 0.506 | 4.08 | 0.825 | 0.409 | 1.23 | -- | -- | -0.969 | 18.6 | 19.3 | 60 | -- | -- |
| 120.16 | 0.511 | 4.03 | 1.12 | -- | 1.7 | -- | 2.67 | -0.902 | -- | 9.047 | 157 | -- | -- |
| 127.26 | 0.529 | 4.04 | 1.1 | 0.731 | -- | 2.31 | -- | -0.77 | 16.8 | -- | -- | -- | -- |
| 141.16 | 0.556 | 4.03 | 1.11 | 0.745 | -- | -- | -- | -0.758 | 16.7 | -- | -- | -- | -- |
| 123.87 | 0.518 | 4.08 | 0.781 | -- | 1.41 | -- | -- | -1 | -- | 19.6 | 157 | -- | -- |
| 133.96 | 0.539 | 4.11 | -- | 0.36 | 1.7 | -- | -- | -1.11 | 19.9 | 17.1 | 60 | -- | -- |
| 170.61 | 0.61 | 4.02 | 1.08 | -- | -- | -- | -- | -0.778 | -- | -- | -- | -- | -- |
| 173.65 | 0.616 | 4.06 | -- | 0.725 | -- | -- | -- | -0.882 | 16.7 | -- | -- | -- | -- |
| 138.53 | 0.548 | 4.1 | -- | -- | 1.76 | -- | -- | -1.12 | -- | 17.25 | 169 | -- | -- |
| 201.5 | 0.663 | 4.05 | -- | -- | -- | -- | -- | -0.898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 105.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 9 | 106.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 13 | 106.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 14 | 106.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 16 | 106.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 18 | 106.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 23 | 107.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 34 | 107.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 35 | 107.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 38 | 107.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 41 | 107.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 44 | 107.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 45 | 107.63 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 49 | 107.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 58 | 107.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 60 | 107.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 20 |
| 78 | 108.25 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 86 | 108.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 137 | 108.94 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 157 | 109.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 158 | 109.16 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 160 | 109.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 178 | 109.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 197 | 109.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 220 | 109.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 233 | 109.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 246 | 109.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 256 | 110.00 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 261 | 110.03 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 269 | 110.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 272 | 110.09 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 273 | 110.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 295 | 110.18 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 321 | 110.25 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 332 | 110.30 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 334 | 110.30 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 335 | 110.30 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 22 |
| 370 | 110.37 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 396 | 110.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 404 | 110.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 459 | 110.53 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 463 | 110.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 470 | 110.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 477 | 110.55 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 480 | 110.56 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 490 | 110.57 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 494 | 110.57 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 13 |
| 499 | 110.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 509 | 110.60 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 512 | 110.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 549 | 110.65 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 550 | 110.65 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 555 | 110.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 576 | 110.68 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 583 | 110.69 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 601 | 110.71 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 624 | 110.73 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 632 | 110.74 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 635 | 110.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 660 | 110.76 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 682 | 110.78 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 709 | 110.80 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 711 | 110.80 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 721 | 110.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 759 | 110.83 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 847 | 110.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 866 | 110.92 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 867 | 110.92 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 901 | 110.94 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 919 | 110.94 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 954 | 110.96 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |