FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0639600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0229) R2 : 0.978
β1 : 1.34 (0.084) R2dD : 0.0128 R2D : -0.215
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -6.64 (0.049) R2dN8 : 1.19 R2N8 : 0.965
σ : 0.43
deviance : 84.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73 0.401 9.75 1.99 0.416 -0.599 -0.187 5.44 -6.5 21 26.5 555 -- --
77.41 0.41 9.83 1.38 0.386 -0.133 0.102 -- -6.63 21.6 25.69 892 -- --
73.08 0.398 9.75 1.99 0.416 -0.617 -- 5.53 -6.51 20.9 26.7 551 -- --
76.91 0.411 9.83 1.32 0.355 0.298 -- -- -6.63 22.3 29.1 4675 -- --
80.74 0.418 9.76 1.82 -- -0.29 -- 4.91 -6.55 -- 26.91 493 -- --
77.79 0.413 9.83 1.34 0.345 -- 0.0377 -- -6.64 21.7 -- -- -- --
77.79 0.413 9.83 1.34 0.345 -- -- -- -6.64 21.7 -- -- -- --
82.63 0.423 9.84 1.03 -- 0.3 -- -- -6.72 -- 33.1 47520 -- --
88.07 0.437 9.86 -- 0.336 0.824 -- -- -6.8 21.9 34.75 47520 -- --
84.88 0.43 9.82 1.34 -- -- -- -- -6.64 -- -- -- -- --
125.08 0.523 9.86 -- 0.349 -- -- -- -6.79 22 -- -- -- --
94.84 0.454 9.86 -- -- 0.832 -- -- -6.8 -- 34.71 47520 -- --
132.44 0.537 9.85 -- -- -- -- -- -6.79 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.26 wind 3.0 30 < th dose independent rect. 2 1
2 62.29 temperature 20.0 30 > th dose independent rect. 2 1
3 62.29 temperature 10.0 30 > th dose dependent rect. 2 1
5 62.30 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 62.33 wind 9.0 30 < th dose independent rect. 2 1
7 62.33 temperature 10.0 30 > th dose independent rect. 2 1
9 62.33 temperature 30.0 30 < th dose independent rect. 2 1
10 62.33 humidity 50.0 30 > th dose independent rect. 2 1
14 62.33 atmosphere 995.0 30 > th dose independent rect. 2 1
15 62.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
17 62.33 radiation 1.0 30 < th dose independent rect. 2 1
22 62.33 precipitation 0.1 30 < th dose independent rect. 2 1
23 62.33 temperature 10.0 30 > th dose independent rect. 3 23
24 62.33 humidity 50.0 30 > th dose dependent rect. 2 1
27 62.33 atmosphere 995.0 30 > th dose dependent rect. 2 1
29 62.33 radiation 1.0 30 < th dose dependent rect. 2 1
34 62.33 precipitation 0.1 30 < th dose dependent rect. 2 1
36 62.35 wind 5.0 30 < th dose dependent rect. 2 1
46 62.48 atmosphere 1015.0 30 < th dose dependent rect. 2 1
48 62.72 temperature 30.0 30 < th dose dependent rect. 2 1
49 62.87 wind 1.0 30 > th dose independent rect. 2 1
66 63.74 radiation 10.0 43200 < th dose dependent rect. 3 1
104 63.95 wind 9.0 1440 < th dose independent rect. 3 1
105 63.95 temperature 10.0 1440 > th dose independent rect. 3 1
108 63.95 temperature 30.0 1440 < th dose independent rect. 3 1
112 63.95 humidity 50.0 1440 > th dose independent rect. 3 1
121 63.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
122 63.95 radiation 1.0 1440 < th dose independent rect. 3 1
142 63.95 temperature 10.0 1440 > th dose independent rect. 4 23
145 63.95 radiation 1.0 1440 < th dose dependent rect. 3 1
164 65.14 wind 9.0 30 < th dose independent rect. 3 23
167 65.51 atmosphere 995.0 30 > th dose independent rect. 3 23
176 66.26 precipitation 0.1 30 < th dose independent rect. 3 23
177 66.26 precipitation 0.1 30 < th dose dependent rect. 3 23
189 68.89 temperature 25.0 270 > th dose dependent rect. 23 8
193 69.26 temperature 25.0 270 > th dose independent rect. 23 8
194 69.29 humidity 50.0 30 > th dose independent rect. 3 23
204 70.24 temperature 25.0 270 > th dose independent rect. 23 4
207 70.41 atmosphere 1015.0 30 < th dose independent rect. 3 23
223 70.68 temperature 25.0 10 < th dose independent rect. 12 15
230 70.78 temperature 30.0 30 < th dose independent rect. 3 23
252 71.20 wind 1.0 43200 < th dose independent rect. 1 7
272 71.48 wind 1.0 43200 < th dose independent rect. 3 5
282 71.57 wind 1.0 43200 > th dose independent rect. 1 7
285 71.62 wind 1.0 43200 < th dose independent rect. 5 2
294 71.67 temperature 25.0 1440 < th dose independent rect. 1 1
338 71.86 temperature 10.0 30 > th dose dependent rect. 3 23
348 71.96 temperature 25.0 720 > th dose dependent rect. 11 4
383 72.14 wind 1.0 43200 > th dose independent rect. 5 2
391 72.18 wind 1.0 43200 < th dose dependent rect. 5 1
427 72.48 wind 1.0 43200 < th dose dependent rect. 1 6
428 72.49 temperature 25.0 10 < th dose independent sin 15 NA
430 72.50 atmosphere 1000.0 43200 > th dose independent rect. 15 1
433 72.51 temperature 25.0 10 > th dose independent sin 16 NA
434 72.51 atmosphere 1000.0 43200 < th dose independent rect. 15 1
450 72.55 atmosphere 1000.0 43200 > th dose independent rect. 15 4
457 72.56 wind 1.0 43200 < th dose dependent rect. 3 4
472 72.62 atmosphere 1000.0 43200 > th dose independent rect. 17 1
512 72.73 atmosphere 1000.0 43200 > th dose independent rect. 19 1
533 72.76 atmosphere 1000.0 43200 < th dose dependent rect. 6 1
541 72.78 wind 1.0 30 > th dose independent rect. 3 23
554 72.80 wind 1.0 43200 < th dose dependent rect. 5 3
556 72.80 atmosphere 1000.0 43200 < th dose dependent rect. 4 4
564 72.81 atmosphere 1000.0 43200 < th dose dependent rect. 24 10
565 72.82 wind 1.0 14400 > th dose independent rect. 2 1
572 72.82 temperature 25.0 90 > th dose independent rect. 11 13
573 72.82 atmosphere 1000.0 43200 < th dose dependent sin 8 NA
575 72.82 atmosphere 1000.0 43200 < th dose dependent rect. 2 7
582 72.84 atmosphere 1000.0 43200 < th dose independent rect. 19 1
583 72.84 wind 1.0 43200 < th dose independent rect. 1 3
614 72.87 atmosphere 1000.0 43200 < th dose dependent rect. 12 20
625 72.88 atmosphere 1000.0 43200 > th dose independent rect. 2 19
632 72.88 atmosphere 1000.0 43200 < th dose dependent rect. 17 18
669 72.91 atmosphere 1000.0 43200 > th dose independent sin 19 NA
723 72.94 temperature 25.0 270 > th dose independent rect. 11 11
729 72.94 atmosphere 1000.0 43200 < th dose independent rect. 1 19
758 72.96 atmosphere 1000.0 43200 > th dose independent rect. 3 3
788 72.97 atmosphere 1005.0 43200 < th dose dependent rect. 4 9
797 72.98 atmosphere 1000.0 43200 < th dose independent sin 19 NA
806 72.98 atmosphere 1000.0 43200 > th dose independent rect. 15 20
836 72.99 atmosphere 1000.0 43200 > th dose independent rect. 15 18
865 73.00 atmosphere 1000.0 43200 > th dose independent rect. 12 19
899 73.01 atmosphere 1000.0 43200 > th dose independent rect. 9 19
925 73.01 atmosphere 1000.0 43200 < th dose dependent sin 16 NA
931 73.02 atmosphere 1000.0 43200 > th dose independent no NA NA
935 73.02 atmosphere 1000.0 43200 < th dose independent rect. 3 3
976 73.03 humidity 90.0 90 < th dose independent rect. 2 1
991 73.03 atmosphere 1000.0 43200 < th dose independent rect. 15 19