Os11g0639400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0639400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.1 | 0.544 | 8.09 | 0.882 | 0.567 | -1.1 | 0.98 | -0.694 | -1.29 | 7.95 | 21.9 | 1520 | -- | -- |
| 135.24 | 0.542 | 8.08 | 1.08 | 0.557 | -1.06 | 1 | -- | -1.25 | 7.87 | 21.9 | 1517 | -- | -- |
| 136.91 | 0.545 | 8.09 | 0.91 | 0.565 | -1.1 | -- | -0.689 | -1.29 | 8.06 | 21.9 | 1519 | -- | -- |
| 137.52 | 0.546 | 8.07 | 1.24 | 0.517 | -1.14 | -- | -- | -1.23 | 8 | 21.8 | 2075 | -- | -- |
| 144.58 | 0.56 | 8.11 | 0.894 | -- | -1.07 | -- | -0.571 | -1.29 | -- | 21.9 | 744 | -- | -- |
| 175.26 | 0.621 | 8.15 | 0.68 | 0.557 | -- | 0.924 | -- | -1.59 | 8.07 | -- | -- | -- | -- |
| 177.79 | 0.624 | 8.15 | 0.707 | 0.554 | -- | -- | -- | -1.59 | 8.23 | -- | -- | -- | -- |
| 145.59 | 0.562 | 8.09 | 1.07 | -- | -1.05 | -- | -- | -1.25 | -- | 21.95 | 710 | -- | -- |
| 167.81 | 0.603 | 8.12 | -- | 0.533 | -0.739 | -- | -- | -1.43 | 7.97 | 22.38 | 1907 | -- | -- |
| 194.76 | 0.652 | 8.16 | 0.711 | -- | -- | -- | -- | -1.58 | -- | -- | -- | -- | -- |
| 190.97 | 0.646 | 8.17 | -- | 0.558 | -- | -- | -- | -1.66 | 8.14 | -- | -- | -- | -- |
| 173.17 | 0.613 | 8.11 | -- | -- | -0.816 | -- | -- | -1.38 | -- | 22.4 | 671 | -- | -- |
| 208.09 | 0.673 | 8.18 | -- | -- | -- | -- | -- | -1.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.94 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 2 | 129.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 4 | 129.43 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 6 | 129.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 11 | 129.82 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 12 | 129.83 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 14 | 129.97 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 15 | 129.98 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 17 | 130.02 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 18 | 130.02 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 20 | 130.08 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 21 | 130.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 35 | 130.27 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 42 | 130.39 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 47 | 130.47 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 53 | 130.57 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 60 | 130.64 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 64 | 130.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 94 | 131.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 242 | 133.04 | wind | 5.0 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 243 | 133.05 | wind | 5.0 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 247 | 133.05 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 253 | 133.10 | wind | 7.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 255 | 133.13 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 260 | 133.16 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 266 | 133.27 | wind | 9.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 279 | 133.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 286 | 133.49 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 302 | 133.74 | wind | 9.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 324 | 134.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 336 | 134.10 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 341 | 134.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 422 | 134.61 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 443 | 134.72 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 449 | 134.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 459 | 134.82 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 461 | 134.83 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 482 | 134.92 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 502 | 135.00 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 511 | 135.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 518 | 135.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 530 | 135.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 535 | 135.12 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 537 | 135.12 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 556 | 135.18 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 560 | 135.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 565 | 135.23 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 8 |
| 628 | 135.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 814 | 135.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 827 | 135.82 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 830 | 135.83 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 836 | 135.84 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 855 | 135.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 862 | 135.89 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 874 | 135.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 875 | 135.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 883 | 135.93 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 888 | 135.94 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 892 | 135.95 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 903 | 135.97 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 967 | 136.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 986 | 136.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 990 | 136.13 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |