Os11g0638900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os11g0638900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.59 | 0.288 | 13 | -0.209 | 0.116 | 1.77 | -0.00568 | 2.24 | 0.239 | 0.453 | 0.7802 | 1548 | -- | -- |
| 39.05 | 0.291 | 12.9 | -0.0517 | 0.216 | 1.29 | 0.461 | -- | 0.243 | 24 | 2.015 | 1547 | -- | -- |
| 37.59 | 0.286 | 13 | -0.208 | 0.115 | 1.77 | -- | 2.24 | 0.239 | 0.455 | 0.7696 | 1548 | -- | -- |
| 39.7 | 0.293 | 12.9 | -0.0706 | 0.169 | 1.32 | -- | -- | 0.264 | 0.392 | 2.074 | 1553 | -- | -- |
| 37.88 | 0.287 | 12.9 | -0.192 | -- | 1.88 | -- | 2.3 | 0.247 | -- | 0.77 | 1565 | -- | -- |
| 53.71 | 0.344 | 13 | -0.278 | 0.501 | -- | 0.366 | -- | 0.106 | 0.65 | -- | -- | -- | -- |
| 54.28 | 0.345 | 13 | -0.291 | 0.5 | -- | -- | -- | 0.104 | 0.661 | -- | -- | -- | -- |
| 40.29 | 0.296 | 12.9 | -0.0636 | -- | 1.47 | -- | -- | 0.274 | -- | 2.04 | 1592 | -- | -- |
| 39.79 | 0.294 | 12.9 | -- | 0.172 | 1.34 | -- | -- | 0.279 | 0.617 | 2.055 | 1553 | -- | -- |
| 69.96 | 0.391 | 13 | -0.274 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 56.52 | 0.352 | 13 | -- | 0.496 | -- | -- | -- | 0.137 | 0.633 | -- | -- | -- | -- |
| 40.33 | 0.296 | 12.9 | -- | -- | 1.49 | -- | -- | 0.282 | -- | 2.016 | 1592 | -- | -- |
| 71.94 | 0.396 | 12.9 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 2 | 37.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 9 | 37.95 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 11 | 37.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 12 | 38.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 50 | 38.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 51 | 38.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 110 | 38.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 168 | 38.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 170 | 38.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 172 | 38.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 225 | 38.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 245 | 38.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 249 | 38.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 271 | 39.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 282 | 39.04 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 345 | 39.12 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 366 | 39.14 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 496 | 39.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 513 | 39.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 545 | 39.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 579 | 39.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 673 | 39.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 681 | 39.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 691 | 39.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 695 | 39.54 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 697 | 39.54 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 711 | 39.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 719 | 39.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 730 | 39.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 777 | 39.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 928 | 39.74 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 983 | 39.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |