Os11g0636600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0636600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.13 | 0.373 | 7.26 | -0.139 | 0.109 | 0.67 | 0.0499 | 1.1 | -0.214 | 19.6 | 62 | 4154 | -- | -- |
| 64.79 | 0.375 | 7.26 | -0.19 | 0.116 | 0.75 | 0.0185 | -- | -0.257 | 19.3 | 62.01 | 4075 | -- | -- |
| 63.11 | 0.37 | 7.26 | -0.134 | 0.117 | 0.676 | -- | 1.13 | -0.215 | 19.7 | 62.41 | 4098 | -- | -- |
| 64.78 | 0.375 | 7.27 | -0.185 | 0.114 | 0.759 | -- | -- | -0.262 | 19.7 | 62 | 4080 | -- | -- |
| 63.77 | 0.372 | 7.26 | -0.145 | -- | 0.675 | -- | 1.07 | -0.218 | -- | 62.65 | 4155 | -- | -- |
| 75.01 | 0.406 | 7.22 | -0.193 | 0.126 | -- | -0.021 | -- | -0.0608 | 18.2 | -- | -- | -- | -- |
| 75.01 | 0.406 | 7.22 | -0.193 | 0.126 | -- | -- | -- | -0.0609 | 18.2 | -- | -- | -- | -- |
| 65.44 | 0.377 | 7.26 | -0.193 | -- | 0.752 | -- | -- | -0.256 | -- | 62 | 4155 | -- | -- |
| 65.69 | 0.377 | 7.26 | -- | 0.118 | 0.764 | -- | -- | -0.243 | 19.7 | 62.25 | 4075 | -- | -- |
| 75.84 | 0.407 | 7.22 | -0.197 | -- | -- | -- | -- | -0.0637 | -- | -- | -- | -- | -- |
| 76 | 0.408 | 7.21 | -- | 0.129 | -- | -- | -- | -0.0394 | 18.1 | -- | -- | -- | -- |
| 66.4 | 0.38 | 7.26 | -- | -- | 0.752 | -- | -- | -0.238 | -- | 62.12 | 4155 | -- | -- |
| 76.86 | 0.409 | 7.21 | -- | -- | -- | -- | -- | -0.0419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.18 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 18 | 63.48 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 16 | 16 |
| 19 | 63.51 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 16 | 4 |
| 47 | 63.76 | humidity | 60.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 48 | 63.79 | humidity | 60.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 49 | 63.80 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 15 | 18 |
| 69 | 63.95 | humidity | 60.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 85 | 63.97 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 17 | 22 |
| 95 | 64.14 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 97 | 64.15 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 99 | 64.16 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 107 | 64.17 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 129 | 64.19 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 132 | 64.23 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 133 | 64.23 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 137 | 64.25 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 143 | 64.26 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 154 | 64.30 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 162 | 64.31 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 16 |
| 175 | 64.32 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 196 | 64.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 240 | 64.48 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 247 | 64.51 | humidity | 60.0 | 4320 | > th | dose independent | no | NA | NA |
| 255 | 64.51 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 2 | 17 |
| 308 | 64.52 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 343 | 64.54 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 354 | 64.59 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 356 | 64.59 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 359 | 64.60 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 369 | 64.60 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 372 | 64.61 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 405 | 64.67 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 420 | 64.68 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 4 | 11 |
| 475 | 64.79 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 17 | 21 |
| 499 | 64.84 | wind | 5.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 502 | 64.85 | radiation | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 520 | 64.86 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 523 | 64.86 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 557 | 64.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 560 | 64.92 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 562 | 64.93 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 577 | 64.96 | humidity | 70.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 606 | 64.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 607 | 64.98 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 609 | 64.98 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 610 | 64.98 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 612 | 64.98 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 613 | 64.98 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 615 | 64.98 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 628 | 65.03 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 678 | 65.08 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 10 | 10 |
| 753 | 65.14 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 755 | 65.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 761 | 65.17 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 855 | 65.29 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 858 | 65.30 | humidity | 60.0 | 4320 | < th | dose independent | no | NA | NA |
| 907 | 65.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 984 | 65.32 | humidity | 70.0 | 4320 | < th | dose dependent | no | NA | NA |