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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0635000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.0349) R2 : 0.479
β1 : -1.45 (0.128) R2dD : 0.153 R2D : 0.126
β2 : 1.56 (0.0909) R2dC : 0.339 R2C : 0.322
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.293 (0.0744) R2dN8 : 0.0237 R2N8 : -0.00712
σ : 0.656
deviance : 196.03
__
_____
C
peak time of C : 6.45
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.35 0.619 4.5 -0.0205 1.56 -0.588 0.0031 4.42 0.149 6.34 19.2 3819 -- --
187.2 0.642 4.67 -1.26 1.45 -0.962 -0.189 -- -0.158 7.08 12.09 16073 -- --
173.35 0.613 4.5 -0.0237 1.56 -0.584 -- 4.42 0.148 6.35 19.1 3817 -- --
187.29 0.642 4.67 -1.27 1.45 -0.955 -- -- -0.159 7.08 10.59 10764 -- --
290.31 0.798 4.67 -1.03 -- -1.24 -- 1.78 -0.0833 -- 24.3 3503 -- --
196.03 0.656 4.7 -1.45 1.56 -- -0.0227 -- -0.293 6.45 -- -- -- --
196.03 0.656 4.7 -1.45 1.56 -- -- -- -0.293 6.45 -- -- -- --
258.83 0.749 4.65 -0.974 -- -1.54 -- -- -0.124 -- 23.8 369 -- --
199.26 0.657 4.58 -- 1.55 -1.26 -- -- 0.219 6.35 9.777 22465 -- --
322.83 0.84 4.73 -1.41 -- -- -- -- -0.26 -- -- -- -- --
251.6 0.742 4.66 -- 1.54 -- -- -- -0.131 6.5 -- -- -- --
290.2 0.793 4.65 -- -- -1.69 -- -- 0.0636 -- 23.65 387 -- --
375.45 0.904 4.69 -- -- -- -- -- -0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.94 temperature 20 4320 < th dose independent rect. 22 1
2 169.28 temperature 20 4320 > th dose independent rect. 22 1
5 170.36 temperature 20 1440 > th dose dependent rect. 24 1
21 171.10 temperature 20 1440 > th dose dependent rect. 23 9
34 171.30 radiation 40 4320 < th dose independent rect. 15 10
47 171.45 humidity 50 43200 < th dose dependent rect. 17 16
50 171.51 radiation 40 4320 < th dose independent rect. 15 6
51 171.51 radiation 40 4320 < th dose independent rect. 15 16
54 171.54 radiation 40 4320 < th dose independent rect. 15 8
82 171.93 radiation 40 4320 < th dose independent rect. 15 1
91 172.01 radiation 10 4320 < th dose independent rect. 18 7
94 172.10 humidity 50 43200 < th dose independent rect. 17 16
117 172.40 humidity 50 43200 > th dose independent rect. 17 16
119 172.42 temperature 20 4320 > th dose dependent rect. 17 7
146 172.60 radiation 10 4320 < th dose independent rect. 18 3
148 172.63 radiation 10 4320 < th dose independent rect. 18 5
155 172.66 temperature 20 4320 < th dose independent rect. 18 12
165 172.74 humidity 50 43200 < th dose independent rect. 4 5
179 172.82 temperature 20 4320 > th dose independent rect. 18 12
181 172.82 humidity 50 43200 < th dose dependent rect. 16 18
194 172.88 atmosphere 1010 43200 < th dose independent rect. 18 1
203 172.93 humidity 50 43200 > th dose independent rect. 1 8
205 172.94 humidity 50 43200 < th dose dependent rect. 8 1
215 172.98 atmosphere 1010 43200 > th dose independent rect. 23 1
216 172.98 temperature 20 10 > th dose independent rect. 22 7
221 172.99 atmosphere 1010 43200 > th dose independent rect. 18 1
229 173.05 humidity 50 43200 < th dose independent rect. 8 1
235 173.07 temperature 20 1440 > th dose dependent sin 10 NA
238 173.08 humidity 50 43200 > th dose independent rect. 23 10
250 173.11 atmosphere 1010 43200 < th dose independent rect. 24 1
253 173.11 atmosphere 1010 43200 > th dose dependent rect. 1 1
288 173.20 atmosphere 1010 43200 > th dose independent rect. 22 6
309 173.25 atmosphere 1010 43200 > th dose independent rect. 18 8
310 173.25 atmosphere 1010 43200 < th dose independent rect. 18 10
318 173.26 atmosphere 1010 43200 > th dose independent rect. 18 10
391 173.32 radiation 20 4320 < th dose independent rect. 17 12
415 173.34 atmosphere 1010 43200 > th dose independent rect. 3 1
433 173.35 temperature 20 4320 < th dose independent sin 12 NA
439 173.36 atmosphere 1010 43200 > th dose independent sin 14 NA
478 173.39 temperature 20 4320 > th dose independent sin 12 NA
480 173.39 wind 1 43200 > th dose independent rect. 23 3
500 173.41 atmosphere 1010 43200 < th dose independent sin 13 NA
718 173.58 humidity 50 43200 > th dose independent rect. 8 1
871 173.66 temperature 20 4320 > th dose dependent sin 14 NA
890 173.68 atmosphere 1010 43200 > th dose independent no NA NA
909 173.68 atmosphere 1010 43200 > th dose independent rect. 21 23
921 173.69 atmosphere 1010 43200 > th dose independent rect. 3 23
947 173.70 atmosphere 1010 43200 > th dose independent rect. 1 23
956 173.71 atmosphere 1010 43200 < th dose independent rect. 15 1