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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0631900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0404) R2 : 0.406
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.946 (0.0985) R2dC : 0.129 R2C : -0.0158
β3 : -2.37 (0.154) R2dE : 0.352 R2E : 0.0986
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.872 (0.0868) R2dN8 : 0.172 R2N8 : 0.0268
σ : 0.751
deviance : 260.32
__
_____
C
peak time of C : 11.5
E
wheather : temperature
threshold : 20.3
memory length : 167
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.69 0.744 4.42 -0.151 0.929 -2.3 -1.16 1.3 0.849 11.4 20.86 162 -- --
252.13 0.74 4.43 -0.326 0.953 -2.21 -0.945 -- 0.811 11.3 20.75 161 -- --
256.45 0.746 4.43 -0.159 0.921 -2.3 -- 1.19 0.851 11.4 20.9 167 -- --
256.14 0.745 4.45 -0.377 0.961 -2.24 -- -- 0.804 11.3 20.72 161 -- --
280 0.779 4.43 0.00163 -- -2.2 -- 2.05 0.883 -- 20.3 560 -- --
337.64 0.861 4.53 -0.895 0.989 -- -0.965 -- 0.406 8.05 -- -- -- --
340.28 0.864 4.53 -0.924 0.996 -- -- -- 0.406 7.86 -- -- -- --
282.2 0.782 4.47 -0.371 -- -2.22 -- -- 0.796 -- 18.72 514 -- --
260.32 0.751 4.44 -- 0.946 -2.37 -- -- 0.872 11.5 20.3 167 -- --
394.12 0.928 4.55 -0.913 -- -- -- -- 0.419 -- -- -- -- --
362.81 0.891 4.51 -- 0.99 -- -- -- 0.509 7.92 -- -- -- --
285.29 0.787 4.46 -- -- -2.38 -- -- 0.855 -- 18 548 -- --
416.11 0.952 4.53 -- -- -- -- -- 0.521 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 249.91 temperature 30 270 < th dose dependent rect. 3 22
2 250.17 temperature 20 90 > th dose dependent rect. 24 23
3 251.00 temperature 30 270 < th dose dependent rect. 3 20
4 251.12 temperature 20 270 > th dose dependent rect. 7 22
12 252.12 temperature 20 270 > th dose dependent rect. 18 23
17 252.68 temperature 20 270 > th dose dependent rect. 22 23
19 252.92 temperature 10 270 > th dose dependent rect. 6 23
22 253.17 temperature 20 90 > th dose dependent no NA NA
66 256.24 temperature 30 90 < th dose dependent rect. 5 20
95 257.66 temperature 30 270 < th dose dependent no NA NA
100 257.72 temperature 30 270 < th dose dependent rect. 17 23
104 257.95 temperature 30 270 < th dose dependent rect. 15 23
143 259.32 temperature 30 270 < th dose dependent rect. 11 23
151 259.49 temperature 30 270 < th dose dependent rect. 13 23
191 260.87 temperature 30 270 < th dose dependent rect. 20 23
197 261.20 temperature 25 270 < th dose independent rect. 3 22
214 261.69 temperature 20 270 > th dose dependent rect. 11 23
218 261.86 temperature 30 10 < th dose dependent rect. 6 20
242 262.77 temperature 25 270 < th dose independent rect. 4 19
262 263.19 temperature 25 270 < th dose independent rect. 5 17
269 263.38 temperature 30 10 < th dose dependent rect. 6 18
318 264.48 temperature 20 270 > th dose dependent sin 2 NA
390 266.31 temperature 25 270 > th dose independent rect. 23 21
448 267.48 radiation 40 4320 < th dose dependent rect. 18 7
473 267.93 radiation 1 14400 < th dose dependent rect. 4 1
478 268.02 temperature 30 30 < th dose dependent rect. 21 23
484 268.26 temperature 20 720 > th dose dependent rect. 17 19
485 268.29 temperature 25 30 > th dose dependent rect. 9 14
498 268.51 temperature 25 30 > th dose dependent rect. 7 16
519 268.75 temperature 30 30 < th dose dependent rect. 23 23
527 268.82 temperature 10 720 > th dose dependent rect. 15 21
538 268.95 temperature 20 1440 > th dose dependent rect. 7 1
542 269.01 temperature 25 270 > th dose independent sin 23 NA
543 269.02 temperature 20 270 > th dose dependent rect. 7 14
553 269.12 temperature 20 720 > th dose dependent rect. 19 17
678 270.12 wind 5 43200 > th dose dependent rect. 13 2
689 270.19 temperature 20 1440 > th dose dependent rect. 2 10
702 270.29 wind 7 43200 < th dose independent rect. 13 3
704 270.31 temperature 30 270 < th dose dependent sin 22 NA
719 270.37 temperature 25 4320 > th dose independent rect. 17 1
729 270.44 temperature 25 4320 < th dose independent rect. 17 1
751 270.53 temperature 25 270 > th dose independent rect. 7 12
761 270.57 wind 7 43200 > th dose independent rect. 13 3
808 270.87 radiation 1 43200 < th dose dependent rect. 24 5
847 271.04 wind 5 43200 > th dose dependent rect. 11 5
861 271.10 temperature 25 270 < th dose independent sin 23 NA
872 271.18 radiation 1 43200 < th dose dependent rect. 19 10
897 271.28 wind 7 43200 < th dose independent rect. 10 6
905 271.31 temperature 20 10 > th dose dependent rect. 17 23
941 271.46 temperature 25 270 > th dose independent rect. 6 21
963 271.58 wind 7 43200 > th dose independent rect. 10 6
964 271.58 radiation 30 4320 < th dose dependent rect. 18 11
968 271.59 temperature 30 1440 < th dose dependent rect. 7 1
982 271.64 temperature 30 1440 < th dose dependent rect. 7 3