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Os11g0630300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.04 (0.0308) R2 : 0.67
β1 : 2.7 (0.113) R2dD : 0.432 R2D : 0.206
β2 : 0.723 (0.0784) R2dC : 0.062 R2C : -0.0382
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.36 (0.0657) R2dN8 : 0.419 R2N8 : 0.177
σ : 0.579
deviance : 152.86
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.83 0.531 7.03 2.64 0.722 -0.736 0.43 -2.99 1.39 20.2 78 5805 -- --
138.8 0.549 7.05 2.75 0.824 -0.864 0.413 -- 1.33 20.3 75.25 3829 -- --
128.39 0.528 7.03 2.63 0.722 -0.733 -- -2.99 1.39 20.1 78 5814 -- --
139.3 0.55 7.06 2.77 0.816 -0.883 -- -- 1.32 20.3 75 3808 -- --
157.04 0.584 7.01 2.63 -- -0.752 -- -2.91 1.39 -- 78.45 5814 -- --
152.4 0.579 7.04 2.71 0.722 -- 0.397 -- 1.36 20 -- -- -- --
152.86 0.579 7.04 2.7 0.723 -- -- -- 1.36 20 -- -- -- --
167.52 0.603 7.06 2.71 -- -0.809 -- -- 1.19 -- 68.43 4335 -- --
183.99 0.632 7.17 -- 0.71 -2.5 -- -- 0.801 20 67 47520 -- --
181.37 0.629 7.02 2.69 -- -- -- -- 1.36 -- -- -- -- --
345.26 0.869 7.11 -- 0.707 -- -- -- 1.06 20.3 -- -- -- --
211.35 0.677 7.15 -- -- -2.51 -- -- 0.787 -- 67 47520 -- --
372.89 0.901 7.09 -- -- -- -- -- 1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.28 precipitation 0.1 43200 > th dose dependent rect. 17 3
9 120.54 precipitation 0.1 14400 < th dose independent rect. 6 12
10 120.54 precipitation 0.1 14400 < th dose dependent rect. 6 12
11 120.58 precipitation 0.1 14400 > th dose independent rect. 6 12
13 120.92 wind 1.0 43200 < th dose dependent rect. 5 2
14 120.95 humidity 70.0 14400 < th dose dependent rect. 10 1
19 121.15 wind 5.0 14400 > th dose independent rect. 7 2
20 121.20 wind 1.0 14400 > th dose independent rect. 24 6
21 121.30 wind 5.0 14400 < th dose independent rect. 7 2
22 121.31 precipitation 0.1 14400 > th dose dependent rect. 5 13
26 121.58 humidity 60.0 14400 > th dose independent rect. 10 2
28 121.61 humidity 60.0 14400 > th dose independent rect. 9 4
30 121.67 humidity 60.0 14400 > th dose independent rect. 4 9
31 121.67 humidity 60.0 14400 > th dose independent rect. 2 11
33 121.67 humidity 60.0 14400 > th dose independent rect. 20 17
34 121.68 humidity 60.0 14400 > th dose independent rect. 6 7
45 121.84 wind 1.0 14400 < th dose independent rect. 2 5
46 121.85 wind 1.0 14400 > th dose independent rect. 2 6
55 122.19 wind 1.0 14400 < th dose independent rect. 4 3
56 122.21 wind 1.0 14400 < th dose independent rect. 24 6
59 122.22 precipitation 0.1 43200 < th dose independent rect. 16 2
61 122.22 precipitation 0.1 43200 < th dose dependent rect. 16 2
65 122.28 temperature 20.0 14400 < th dose independent rect. 21 1
67 122.30 precipitation 0.1 43200 > th dose independent rect. 16 2
68 122.33 humidity 60.0 14400 < th dose independent rect. 10 3
70 122.38 wind 1.0 14400 > th dose independent rect. 2 8
75 122.50 temperature 20.0 14400 > th dose independent rect. 20 2
79 122.55 humidity 50.0 14400 > th dose independent sin 12 NA
85 122.63 humidity 60.0 4320 < th dose independent rect. 12 1
86 122.64 humidity 60.0 14400 > th dose independent sin 7 NA
87 122.66 humidity 60.0 4320 > th dose independent rect. 12 1
94 122.75 wind 1.0 14400 < th dose independent rect. 2 8
97 122.82 wind 1.0 43200 > th dose independent rect. 5 2
100 122.85 humidity 50.0 14400 > th dose independent rect. 15 20
101 122.85 wind 1.0 14400 < th dose dependent rect. 2 5
105 122.92 humidity 60.0 14400 < th dose independent rect. 21 17
107 122.93 humidity 60.0 14400 < th dose independent rect. 7 7
135 123.05 humidity 60.0 14400 < th dose independent rect. 17 20
141 123.18 humidity 50.0 14400 < th dose independent sin 12 NA
163 123.29 wind 1.0 43200 < th dose dependent rect. 1 1
170 123.33 humidity 50.0 14400 > th dose independent rect. 15 2
181 123.50 humidity 90.0 14400 > th dose independent rect. 21 1
186 123.53 precipitation 0.1 14400 > th dose dependent sin 1 NA
192 123.57 wind 7.0 43200 < th dose dependent rect. 5 3
206 123.74 wind 1.0 14400 > th dose independent rect. 24 3
208 123.76 wind 5.0 43200 < th dose dependent rect. 5 1
210 123.80 humidity 60.0 14400 < th dose independent sin 5 NA
219 123.91 wind 3.0 14400 > th dose independent rect. 24 1
235 123.96 wind 3.0 14400 < th dose independent rect. 24 1
249 124.06 wind 1.0 43200 < th dose dependent rect. 3 10
267 124.11 wind 5.0 43200 < th dose dependent rect. 7 1
271 124.14 wind 5.0 14400 < th dose dependent rect. 24 1
303 124.37 wind 1.0 43200 > th dose dependent rect. 5 1
310 124.42 wind 7.0 43200 < th dose independent rect. 19 1
313 124.42 wind 1.0 43200 > th dose dependent rect. 5 3
324 124.50 wind 7.0 43200 > th dose independent rect. 19 1
331 124.57 humidity 70.0 14400 < th dose dependent rect. 21 14
335 124.58 humidity 70.0 14400 < th dose dependent rect. 6 5
350 124.60 wind 1.0 43200 < th dose dependent rect. 1 12
353 124.63 temperature 25.0 14400 < th dose independent rect. 10 1
368 124.65 precipitation 0.1 14400 < th dose independent sin 0 NA
371 124.65 precipitation 0.1 14400 < th dose dependent sin 0 NA
373 124.67 precipitation 0.1 14400 > th dose independent sin 0 NA
378 124.70 wind 1.0 14400 < th dose dependent rect. 2 8
380 124.70 wind 9.0 43200 > th dose dependent rect. 15 17
443 125.00 temperature 25.0 14400 > th dose independent rect. 10 1
445 125.00 wind 7.0 43200 > th dose dependent rect. 17 14
447 125.02 wind 7.0 43200 > th dose dependent rect. 17 12
452 125.06 wind 3.0 14400 > th dose dependent rect. 7 2
456 125.07 wind 1.0 43200 < th dose dependent rect. 5 5
458 125.08 humidity 90.0 14400 > th dose dependent rect. 21 1
465 125.11 wind 9.0 43200 > th dose independent sin 12 NA
470 125.13 wind 7.0 43200 > th dose dependent sin 12 NA
475 125.16 wind 9.0 43200 < th dose independent sin 12 NA
479 125.16 wind 3.0 43200 > th dose dependent rect. 17 15
480 125.17 humidity 50.0 14400 > th dose independent rect. 15 6
486 125.18 humidity 50.0 14400 > th dose independent rect. 15 16
539 125.26 humidity 50.0 14400 > th dose independent rect. 15 11
569 125.30 wind 7.0 43200 > th dose dependent rect. 15 20
597 125.34 wind 5.0 14400 > th dose dependent rect. 19 2
629 125.43 humidity 60.0 14400 < th dose independent no NA NA
678 125.44 wind 7.0 43200 > th dose independent rect. 17 12
692 125.44 wind 9.0 43200 > th dose independent rect. 15 20
720 125.46 wind 7.0 43200 < th dose independent rect. 17 12
722 125.46 wind 9.0 43200 < th dose independent rect. 15 20
730 125.49 wind 7.0 43200 > th dose independent rect. 17 14
733 125.50 wind 7.0 43200 < th dose independent rect. 17 14
750 125.52 wind 1.0 43200 < th dose dependent rect. 23 8
807 125.63 precipitation 0.1 14400 < th dose independent rect. 14 4
821 125.63 precipitation 0.1 14400 < th dose dependent rect. 14 4
823 125.64 wind 9.0 43200 > th dose independent rect. 15 18
825 125.65 precipitation 0.1 14400 > th dose independent rect. 14 4
835 125.67 wind 7.0 43200 < th dose independent rect. 18 6
857 125.72 radiation 10.0 43200 < th dose dependent rect. 7 1
859 125.73 humidity 70.0 14400 < th dose dependent sin 8 NA
860 125.74 wind 9.0 43200 < th dose independent rect. 15 18
868 125.76 humidity 60.0 14400 > th dose independent no NA NA
968 125.85 humidity 50.0 14400 < th dose independent rect. 15 2
993 125.88 wind 7.0 43200 > th dose independent rect. 17 7
1000 125.90 humidity 60.0 14400 < th dose independent rect. 12 23