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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0626700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.32 (0.0598) R2 : 0.83
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.64 (0.139) R2dC : 0.135 R2C : -0.117
β3 : 2.65 (0.161) R2dE : 0.129 R2E : -0.409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.86 (0.135) R2dN8 : 1.09 R2N8 : 0.559
σ : 1.1
deviance : 554.67
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_____
C
peak time of C : 23.4
E
wheather : temperature
threshold : 20.8
memory length : 44094
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.451
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
554.55 1.11 8.15 2.34 3.53 1.91 0.571 -0.918 -5.02 23 20.9 803 2.43 --
553.67 1.1 8.09 2.57 3.67 1.98 0.569 -- -4.96 23.2 20.95 721 1.36 --
554.73 1.1 8.14 2.34 3.62 1.98 -- -0.646 -5.05 23.3 21 783 1.36 --
551.29 1.09 8.13 2.55 3.75 2.01 -- -- -4.98 23.5 21.43 664 0.0143 --
1024.14 1.49 8.08 2.42 -- 1.86 -- -0.664 -4.93 -- 24.8 2649 1.49 --
651.46 1.2 8.01 3.06 2.67 -- 0.0847 -- -4.55 23.3 -- -- -- --
651.49 1.2 8.01 3.05 2.67 -- -- -- -4.55 23.3 -- -- -- --
1004.66 1.48 8.06 2.42 -- 2.38 -- -- -4.85 -- 24.9 2571 0.000336 --
554.67 1.1 8.32 -- 2.64 2.65 -- -- -5.86 23.4 20.8 44094 0.451 --
1098.24 1.55 7.94 3.12 -- -- -- -- -4.52 -- -- -- -- --
897.44 1.4 8.09 -- 2.7 -- -- -- -4.89 23.4 -- -- -- --
980.63 1.46 8.27 -- -- 2.82 -- -- -5.97 -- 23.35 47520 0.000115 --
1355.52 1.72 8.02 -- -- -- -- -- -4.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 516.61 wind 1.0 14400 < th dose dependent rect. 24 3
2 517.30 wind 1.0 14400 < th dose independent rect. 24 3
5 520.83 precipitation 0.1 43200 > th dose independent rect. 23 1
6 520.83 precipitation 0.1 43200 < th dose independent rect. 23 1
7 520.83 precipitation 0.1 43200 > th dose dependent rect. 23 1
8 520.83 precipitation 0.1 43200 < th dose dependent rect. 23 1
9 521.05 wind 1.0 14400 > th dose independent rect. 24 1
10 521.33 precipitation 0.1 43200 < th dose independent rect. 2 1
11 521.33 precipitation 0.1 43200 < th dose dependent rect. 2 1
12 521.77 precipitation 0.1 43200 > th dose dependent rect. 2 1
14 522.05 precipitation 0.1 43200 > th dose independent rect. 2 1
18 523.19 precipitation 0.1 43200 < th dose independent rect. 1 4
19 523.19 precipitation 0.1 43200 < th dose dependent rect. 1 4
20 523.21 wind 1.0 14400 < th dose dependent rect. 22 9
21 523.23 precipitation 0.1 43200 > th dose independent rect. 1 4
23 524.24 wind 1.0 14400 < th dose independent rect. 24 1
27 524.57 humidity 70.0 43200 > th dose independent rect. 15 1
33 524.69 precipitation 0.1 43200 > th dose dependent rect. 1 4
36 524.79 precipitation 0.1 43200 > th dose independent rect. 23 7
39 524.99 wind 1.0 43200 < th dose independent rect. 12 2
40 524.99 precipitation 0.1 43200 < th dose independent rect. 23 8
41 524.99 precipitation 0.1 43200 < th dose dependent rect. 23 8
48 525.11 wind 1.0 14400 > th dose independent rect. 24 3
55 525.32 wind 1.0 43200 < th dose dependent rect. 6 1
56 525.38 precipitation 0.1 43200 > th dose dependent rect. 23 6
89 526.21 radiation 1.0 43200 > th dose independent rect. 5 1
92 526.29 radiation 1.0 43200 < th dose independent rect. 5 1
96 526.34 humidity 90.0 14400 < th dose independent rect. 24 5
101 526.51 wind 1.0 43200 > th dose independent rect. 12 2
120 526.67 radiation 1.0 43200 < th dose independent rect. 21 9
122 526.69 humidity 70.0 43200 > th dose dependent rect. 24 1
127 526.71 radiation 1.0 43200 < th dose independent rect. 1 5
131 526.72 radiation 1.0 43200 < th dose independent rect. 23 7
145 527.05 wind 5.0 43200 < th dose independent rect. 18 1
161 527.30 wind 5.0 43200 > th dose independent rect. 18 1
176 527.49 humidity 60.0 43200 > th dose dependent rect. 22 8
192 527.62 humidity 80.0 43200 > th dose dependent rect. 5 2
263 528.07 humidity 70.0 43200 < th dose independent rect. 14 2
336 528.69 wind 5.0 43200 > th dose dependent rect. 18 1
353 528.86 humidity 90.0 43200 < th dose independent rect. 6 1
386 529.05 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
413 529.33 atmosphere 1010.0 43200 > th dose dependent rect. 16 3
421 529.49 atmosphere 1010.0 43200 > th dose dependent rect. 18 1
445 529.64 atmosphere 1010.0 43200 > th dose dependent rect. 13 6
486 529.86 atmosphere 1010.0 43200 > th dose dependent rect. 13 1
494 529.93 radiation 1.0 43200 > th dose dependent rect. 15 3
495 529.94 radiation 40.0 43200 < th dose dependent rect. 16 1
498 529.96 wind 1.0 14400 > th dose independent rect. 22 5
502 529.98 radiation 1.0 43200 > th dose dependent rect. 16 1
518 530.04 radiation 40.0 43200 < th dose dependent rect. 15 4
519 530.04 radiation 40.0 43200 < th dose dependent rect. 15 13
522 530.05 radiation 40.0 43200 < th dose dependent rect. 15 8
523 530.05 radiation 40.0 43200 < th dose dependent rect. 15 10
575 530.23 radiation 10.0 43200 < th dose dependent rect. 16 16
586 530.29 atmosphere 1010.0 43200 > th dose dependent rect. 20 1
588 530.30 wind 3.0 43200 < th dose dependent rect. 22 1
648 530.51 wind 1.0 43200 < th dose independent rect. 22 1
649 530.51 humidity 70.0 43200 > th dose dependent sin 10 NA
670 530.58 humidity 90.0 14400 < th dose independent rect. 24 1
697 530.65 humidity 90.0 43200 > th dose independent rect. 1 1
713 530.68 atmosphere 1015.0 43200 > th dose independent rect. 23 1
747 530.83 atmosphere 1010.0 43200 > th dose dependent sin 19 NA
790 530.98 humidity 90.0 43200 < th dose independent rect. 4 3
799 531.00 wind 1.0 43200 < th dose dependent rect. 18 17
849 531.17 atmosphere 1015.0 43200 < th dose independent rect. 23 1
856 531.20 radiation 10.0 43200 < th dose dependent sin 13 NA
862 531.21 radiation 1.0 43200 < th dose dependent rect. 5 1
881 531.28 radiation 1.0 43200 < th dose dependent rect. 19 11
899 531.34 humidity 80.0 43200 > th dose independent rect. 15 9
980 531.58 atmosphere 1015.0 43200 > th dose independent rect. 20 1