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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0625700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0513) R2 : 0.127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.79 (0.687) R2dE : 0.0933 R2E : 0.0883
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.426 (0.108) R2dN8 : 0.0385 R2N8 : 0.0335
σ : 0.963
deviance : 427.92
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.244
memory length : 18
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.9
open length of G : 0.783

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
418.14 0.961 3.37 0.33 0.138 1.91 -1.33 -13.2 -0.382 0.401 5.2 15 21.1 1.28
413.36 0.947 3.38 0.343 0.171 4.39 -1.3 -- -0.402 23.7 5.236 18 20.9 0.8
425.38 0.961 3.37 0.385 0.158 1.86 -- -14.3 -0.372 22.5 5.138 15 21.2 2.06
421.4 0.956 3.38 0.371 0.169 4.72 -- -- -0.394 22.5 5.245 18 20.9 0.775
425.26 0.96 3.37 0.395 -- 1.95 -- -14.6 -0.371 -- 5.137 15 21.2 2.66
455.16 1 3.39 0.25 0.228 -- -1.68 -- -0.426 23.4 -- -- -- --
467 1.01 3.39 0.321 0.25 -- -- -- -0.417 22.2 -- -- -- --
422.94 0.958 3.38 0.429 -- 4.92 -- -- -0.379 -- 5.212 18 21 0.733
426.15 0.961 3.39 -- 0.17 4.7 -- -- -0.427 22.7 5.23 18 20.9 0.774
470.79 1.01 3.38 0.325 -- -- -- -- -0.417 -- -- -- -- --
469.71 1.01 3.4 -- 0.252 -- -- -- -0.453 22.3 -- -- -- --
427.92 0.963 3.39 -- -- 4.79 -- -- -0.426 -- 5.244 18 20.9 0.783
473.57 1.02 3.39 -- -- -- -- -- -0.453 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 419.72 radiation 10.0 90 < th dose dependent rect. 12 3
2 419.99 wind 5.0 10 > th dose independent rect. 21 1
5 421.04 radiation 30.0 90 < th dose dependent rect. 12 1
8 422.84 radiation 30.0 90 < th dose independent rect. 12 4
9 422.96 wind 3.0 90 < th dose independent rect. 13 3
15 423.55 radiation 10.0 90 < th dose independent rect. 12 3
19 423.86 radiation 10.0 10 < th dose independent rect. 13 1
22 423.92 radiation 20.0 10 < th dose dependent rect. 14 1
33 424.32 precipitation 0.1 90 > th dose independent rect. 13 1
36 424.32 precipitation 0.1 90 > th dose dependent rect. 13 1
51 424.57 radiation 30.0 10 < th dose dependent rect. 13 3
54 424.81 radiation 30.0 90 < th dose independent rect. 12 1
80 425.47 wind 5.0 10 < th dose dependent rect. 13 4
88 425.72 radiation 40.0 90 < th dose independent rect. 16 20
115 426.61 wind 3.0 30 > th dose dependent rect. 21 1
148 428.07 radiation 40.0 90 < th dose dependent rect. 16 20
160 428.31 humidity 60.0 90 > th dose dependent rect. 12 3
165 428.40 humidity 60.0 90 > th dose dependent rect. 12 1
170 428.61 humidity 50.0 10 > th dose dependent rect. 12 4
172 428.67 temperature 25.0 90 < th dose dependent rect. 13 2
178 428.82 atmosphere 1000.0 270 > th dose dependent rect. 12 1
190 429.16 atmosphere 1000.0 30 > th dose dependent rect. 12 4
220 430.05 humidity 80.0 10 > th dose dependent rect. 14 1
237 430.32 humidity 80.0 10 > th dose independent rect. 14 1
255 430.61 humidity 80.0 90 < th dose dependent rect. 24 8
281 431.04 atmosphere 1010.0 270 > th dose independent rect. 12 1
296 431.15 humidity 60.0 90 > th dose independent rect. 12 1
303 431.20 temperature 25.0 10 < th dose dependent rect. 13 1
305 431.21 atmosphere 1000.0 30 > th dose independent rect. 12 4
340 431.70 temperature 30.0 270 < th dose independent rect. 12 1
502 433.27 wind 3.0 270 > th dose independent rect. 12 1
503 433.28 humidity 80.0 90 < th dose independent rect. 24 8
539 433.72 wind 1.0 30 > th dose independent rect. 12 4
558 433.93 temperature 15.0 30 > th dose independent rect. 16 20
560 433.96 radiation 40.0 90 < th dose independent rect. 4 8
565 434.02 temperature 10.0 1440 > th dose independent rect. 13 4
569 434.02 temperature 10.0 1440 > th dose independent rect. 17 20
578 434.06 radiation 30.0 30 < th dose independent rect. 13 15
585 434.12 temperature 30.0 10 < th dose independent rect. 13 3
604 434.32 wind 3.0 90 < th dose independent rect. 13 8
617 434.41 wind 7.0 270 < th dose independent rect. 12 1
618 434.41 radiation 20.0 90 > th dose independent rect. 6 1
633 434.41 radiation 20.0 90 > th dose dependent rect. 6 1
665 434.59 wind 5.0 90 > th dose independent rect. 4 4
675 434.67 wind 5.0 90 > th dose dependent rect. 4 4
678 434.72 atmosphere 1010.0 30 < th dose independent rect. 12 4
683 434.75 wind 3.0 90 < th dose dependent rect. 14 1
691 434.82 temperature 20.0 270 > th dose independent rect. 12 1
692 434.83 wind 9.0 270 < th dose independent rect. 13 23
698 434.88 temperature 10.0 270 > th dose independent rect. 12 1
700 434.88 atmosphere 995.0 270 > th dose independent rect. 12 1
701 434.88 atmosphere 1015.0 270 < th dose independent rect. 12 1
702 434.88 precipitation 0.1 270 < th dose independent rect. 12 1
703 434.88 temperature 10.0 270 > th dose independent rect. 13 23
704 434.88 precipitation 0.1 270 < th dose dependent rect. 12 1
705 434.89 temperature 20.0 30 > th dose independent rect. 12 4
708 434.90 wind 9.0 30 < th dose independent rect. 16 20
711 434.91 humidity 90.0 270 < th dose independent rect. 12 1
716 434.94 wind 5.0 90 > th dose independent rect. 7 1
717 434.94 radiation 1.0 270 > th dose independent rect. 12 1
720 434.94 temperature 10.0 30 > th dose independent rect. 12 4
725 434.95 humidity 50.0 10 > th dose independent rect. 12 4
726 434.95 precipitation 0.1 30 < th dose independent rect. 12 4
727 434.95 precipitation 0.1 30 < th dose dependent rect. 12 4
733 434.98 wind 5.0 90 > th dose dependent rect. 7 1
762 435.16 wind 1.0 270 > th dose dependent rect. 12 1
804 435.47 wind 9.0 90 > th dose dependent rect. 20 14
806 435.49 wind 9.0 90 > th dose independent rect. 21 13
898 435.81 wind 9.0 30 < th dose dependent rect. 13 15
900 435.82 wind 9.0 90 > th dose dependent rect. 18 5
909 435.88 humidity 80.0 90 < th dose independent rect. 21 11
934 435.96 atmosphere 1000.0 30 > th dose independent rect. 15 1
936 435.98 temperature 25.0 10 < th dose independent rect. 13 1
960 436.04 humidity 80.0 90 < th dose independent rect. 5 2
976 436.07 precipitation 0.1 30 < th dose independent rect. 16 20
978 436.07 precipitation 0.1 30 < th dose dependent rect. 16 20