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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0623800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ras GTPase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0532) R2 : 0.141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.35 (0.351) R2dE : 0.0895 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.424 (0.114) R2dN8 : 0.0404 R2N8 : 0.0515
σ : 0.996
deviance : 457.25
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.054
memory length : 6540
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
446.54 0.993 3.6 0.19 0.278 3.41 1.26 3.4 -0.447 19.2 0.9575 5939 18 1.18
452.2 0.99 3.6 0.363 0.289 2.71 1.24 -- -0.361 19.3 1.008 5932 18 1.17
450.63 0.989 3.6 0.177 0.274 3.57 -- 3.74 -0.454 19.5 0.9393 5930 18 1.18
454.73 0.993 3.6 0.231 0.237 2.49 -- -- -0.442 19.6 1.03 6091 18 1.15
453.53 0.992 3.6 0.202 -- 3.62 -- 3.9 -0.458 -- 0.9361 6418 18 1.18
491.54 1.04 3.63 0.274 0.289 -- 1.25 -- -0.584 19.6 -- -- -- --
495.95 1.04 3.63 0.244 0.29 -- -- -- -0.583 19.6 -- -- -- --
455.98 0.995 3.59 0.241 -- 2.4 -- -- -0.411 -- 1.038 6530 18 1.2
454.81 0.993 3.6 -- 0.272 2.32 -- -- -0.465 19.5 1.057 6308 18 1.17
500.46 1.05 3.62 0.24 -- -- -- -- -0.587 -- -- -- -- --
497.52 1.04 3.64 -- 0.288 -- -- -- -0.61 19.7 -- -- -- --
457.25 0.996 3.59 -- -- 2.35 -- -- -0.424 -- 1.054 6540 18 1.2
501.98 1.05 3.63 -- -- -- -- -- -0.614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 446.87 wind 5.0 14400 > th dose independent rect. 19 18
3 447.45 wind 5.0 14400 < th dose independent rect. 19 18
9 448.07 wind 5.0 14400 > th dose dependent rect. 7 2
11 448.34 wind 1.0 43200 > th dose independent rect. 16 5
14 448.88 wind 7.0 14400 < th dose independent rect. 8 1
17 449.12 wind 5.0 14400 < th dose independent rect. 7 3
20 449.29 wind 5.0 14400 > th dose independent rect. 7 3
21 449.35 wind 5.0 14400 > th dose independent rect. 8 1
22 449.46 wind 5.0 14400 > th dose dependent rect. 6 4
24 449.49 wind 5.0 14400 > th dose independent rect. 5 6
29 449.62 wind 5.0 14400 > th dose dependent rect. 19 17
54 450.66 wind 5.0 14400 < th dose independent rect. 4 8
70 451.10 wind 5.0 14400 > th dose independent sin 7 NA
75 451.29 wind 5.0 14400 < th dose independent sin 7 NA
76 451.54 wind 1.0 43200 > th dose independent rect. 15 8
93 452.20 wind 1.0 43200 < th dose dependent rect. 13 8
101 452.48 wind 1.0 43200 < th dose independent rect. 16 5
103 452.51 wind 1.0 4320 < th dose dependent rect. 18 1
108 452.59 wind 5.0 14400 < th dose independent rect. 24 12
142 453.64 wind 1.0 43200 < th dose dependent rect. 13 6
152 453.81 humidity 80.0 43200 > th dose dependent rect. 21 1
156 453.87 wind 9.0 14400 > th dose dependent rect. 18 18
161 453.95 humidity 70.0 1440 > th dose dependent rect. 18 1
180 454.51 wind 9.0 43200 > th dose dependent rect. 14 7
194 454.90 temperature 20.0 14400 > th dose independent rect. 21 2
195 454.91 humidity 80.0 43200 > th dose dependent rect. 20 4
196 454.94 wind 9.0 43200 > th dose dependent rect. 14 9
210 455.20 humidity 80.0 1440 < th dose independent rect. 18 2
216 455.32 temperature 20.0 14400 < th dose independent rect. 21 2
220 455.36 wind 9.0 43200 > th dose dependent rect. 14 16
221 455.37 wind 9.0 43200 > th dose dependent rect. 18 12
228 455.46 wind 9.0 43200 > th dose dependent rect. 14 11
231 455.49 wind 9.0 43200 > th dose dependent rect. 14 13
254 455.78 wind 5.0 14400 > th dose dependent sin 9 NA
267 455.97 humidity 70.0 1440 > th dose independent rect. 16 3
275 456.06 humidity 70.0 1440 > th dose independent rect. 16 16
285 456.35 wind 3.0 43200 < th dose dependent rect. 18 1
287 456.36 humidity 90.0 1440 < th dose dependent rect. 18 1
292 456.42 wind 9.0 43200 > th dose independent rect. 18 12
299 456.55 precipitation 0.1 4320 > th dose independent rect. 9 9
300 456.57 precipitation 0.1 4320 < th dose independent rect. 9 9
303 456.57 precipitation 0.1 4320 < th dose dependent rect. 9 9
307 456.65 humidity 70.0 1440 > th dose independent rect. 16 6
309 456.67 humidity 70.0 1440 > th dose independent rect. 16 8
329 456.83 precipitation 0.1 4320 < th dose independent rect. 12 6
330 456.83 precipitation 0.1 4320 < th dose dependent rect. 12 6
333 456.84 precipitation 0.1 43200 > th dose dependent rect. 17 4
334 456.86 precipitation 0.1 43200 > th dose dependent rect. 17 2
338 456.91 precipitation 0.1 4320 > th dose independent rect. 12 6
361 457.07 wind 9.0 43200 > th dose independent rect. 14 7
371 457.15 wind 1.0 4320 > th dose independent rect. 18 1
405 457.32 wind 1.0 4320 < th dose independent rect. 18 1
414 457.39 wind 9.0 43200 < th dose independent rect. 14 7
420 457.43 humidity 70.0 1440 < th dose independent rect. 16 2
424 457.47 wind 5.0 14400 < th dose independent rect. 20 1
445 457.67 wind 5.0 14400 > th dose independent rect. 20 1
457 457.71 wind 9.0 43200 > th dose independent rect. 14 13
462 457.75 wind 9.0 43200 < th dose independent rect. 18 12
468 457.82 wind 9.0 43200 > th dose independent rect. 14 11
487 457.92 humidity 70.0 1440 > th dose independent sin 14 NA
497 457.96 wind 9.0 43200 > th dose dependent sin 13 NA
502 457.98 wind 9.0 43200 > th dose independent rect. 14 16
512 458.09 wind 9.0 43200 > th dose independent rect. 17 5
525 458.14 humidity 70.0 1440 < th dose independent rect. 15 17
527 458.15 precipitation 0.1 14400 < th dose independent rect. 17 6
529 458.15 precipitation 0.1 14400 < th dose dependent rect. 17 6
530 458.16 temperature 20.0 14400 > th dose independent sin 17 NA
535 458.19 wind 9.0 43200 < th dose independent rect. 14 13
539 458.20 precipitation 0.1 14400 > th dose independent rect. 17 6
548 458.24 wind 1.0 43200 > th dose independent rect. 8 2
550 458.25 humidity 70.0 43200 > th dose dependent rect. 8 18
559 458.30 wind 9.0 43200 < th dose independent rect. 14 11
563 458.32 wind 9.0 43200 < th dose independent rect. 17 4
574 458.38 precipitation 0.1 14400 > th dose dependent rect. 17 7
591 458.47 wind 1.0 4320 > th dose independent rect. 10 9
598 458.49 humidity 70.0 43200 > th dose dependent rect. 12 13
607 458.54 wind 9.0 43200 > th dose independent sin 15 NA
608 458.54 wind 9.0 43200 < th dose independent sin 15 NA
612 458.55 wind 9.0 43200 < th dose independent rect. 14 16
634 458.59 wind 5.0 14400 > th dose dependent rect. 20 8
636 458.60 humidity 80.0 43200 > th dose independent rect. 4 10
703 458.93 precipitation 0.1 14400 < th dose independent rect. 17 2
706 458.93 precipitation 0.1 14400 < th dose dependent rect. 17 2
714 458.98 humidity 80.0 1440 < th dose dependent rect. 15 5
720 459.00 wind 1.0 43200 < th dose independent rect. 8 2
727 459.03 wind 9.0 14400 > th dose dependent rect. 16 20
741 459.13 wind 7.0 43200 > th dose dependent rect. 11 11
747 459.15 precipitation 0.1 14400 > th dose independent rect. 17 2
752 459.17 wind 7.0 43200 > th dose dependent rect. 17 4
760 459.21 temperature 20.0 14400 < th dose independent sin 17 NA
762 459.22 wind 1.0 4320 > th dose independent rect. 13 2
769 459.24 humidity 70.0 43200 > th dose dependent sin 18 NA
771 459.26 wind 1.0 4320 > th dose independent rect. 13 6
780 459.29 wind 9.0 43200 < th dose independent rect. 11 10
788 459.33 wind 7.0 43200 > th dose dependent rect. 11 16
791 459.35 wind 7.0 43200 > th dose dependent rect. 11 14
797 459.39 wind 9.0 43200 < th dose independent rect. 11 16
800 459.41 humidity 70.0 1440 < th dose independent sin 14 NA
825 459.47 humidity 50.0 1440 > th dose dependent rect. 15 6
829 459.48 wind 7.0 43200 > th dose dependent rect. 11 19
836 459.50 wind 9.0 43200 < th dose independent rect. 17 22
848 459.52 wind 9.0 14400 < th dose independent rect. 18 8
882 459.57 temperature 25.0 14400 < th dose dependent rect. 13 1
924 459.67 humidity 70.0 43200 > th dose dependent rect. 13 11
926 459.68 humidity 80.0 43200 > th dose independent rect. 5 8
927 459.68 humidity 80.0 43200 < th dose independent rect. 5 9
954 459.72 humidity 80.0 43200 < th dose independent rect. 4 11
955 459.73 wind 1.0 4320 > th dose independent rect. 10 1
967 459.78 wind 9.0 43200 < th dose independent rect. 11 19
977 459.81 wind 1.0 4320 < th dose independent rect. 10 1
993 459.84 wind 1.0 43200 < th dose independent rect. 13 10