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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0622600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0181) R2 : 0.0146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0991 (0.0382) R2dN8 : 0.0188 R2N8 : 0.0146
σ : 0.341
deviance : 53.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.62 0.334 2.91 0.00761 0.0237 0.545 0.146 -1.33 0.113 12.6 1012 106 -- --
51.59 0.335 2.91 -0.0123 0.0257 0.606 0.196 -- 0.11 12.4 1012 210 -- --
50.7 0.332 2.91 0.0118 0.0239 0.535 -- -1.37 0.113 12.1 1012 107 -- --
51.76 0.335 2.91 -0.00471 0.0276 0.561 -- -- 0.113 10.9 1011 206 -- --
50.74 0.332 2.91 0.0122 -- 0.527 -- -1.4 0.113 -- 1012 101 -- --
53.35 0.342 2.92 -0.0329 0.0178 -- 0.171 -- 0.0955 12.9 -- -- -- --
53.46 0.342 2.92 -0.0269 0.0214 -- -- -- 0.0961 10.4 -- -- -- --
51.8 0.335 2.91 -0.00835 -- 0.547 -- -- 0.113 -- 1011 206 -- --
51.76 0.335 2.91 -- 0.0276 0.56 -- -- 0.113 10.7 1011 206 -- --
53.49 0.342 2.92 -0.0273 -- -- -- -- 0.096 -- -- -- -- --
53.48 0.342 2.92 -- 0.0216 -- -- -- 0.0991 10.5 -- -- -- --
51.8 0.335 2.91 -- -- 0.548 -- -- 0.114 -- 1011 206 -- --
53.51 0.341 2.92 -- -- -- -- -- 0.0991 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.73 atmosphere 1015 30 < th dose independent rect. 3 23
4 50.50 humidity 80 4320 < th dose dependent rect. 3 4
8 50.64 atmosphere 1015 30 < th dose independent rect. 23 23
10 50.66 humidity 70 4320 > th dose independent rect. 4 3
15 50.73 humidity 80 4320 < th dose independent rect. 4 1
16 50.73 humidity 70 4320 < th dose independent rect. 6 1
18 50.73 humidity 80 4320 < th dose independent rect. 3 3
27 50.73 humidity 70 4320 < th dose dependent rect. 6 1
47 50.79 humidity 70 4320 > th dose independent rect. 24 7
58 50.99 atmosphere 1010 30 > th dose dependent rect. 10 15
67 51.00 atmosphere 1010 30 > th dose dependent sin 18 NA
68 51.00 atmosphere 1010 30 > th dose dependent rect. 11 13
80 51.01 atmosphere 1010 30 > th dose dependent no NA NA
82 51.01 atmosphere 1010 30 > th dose dependent rect. 23 13
215 51.02 atmosphere 1010 720 > th dose dependent rect. 9 9
442 51.05 wind 9 43200 < th dose independent rect. 7 1
444 51.05 atmosphere 1010 10 > th dose dependent sin 6 NA
469 51.09 atmosphere 1010 270 > th dose dependent rect. 11 10
483 51.11 wind 9 43200 < th dose independent rect. 5 5
485 51.11 humidity 70 4320 > th dose independent rect. 22 9
596 51.17 atmosphere 1015 270 < th dose independent rect. 10 23
617 51.19 atmosphere 1010 720 > th dose dependent sin 22 NA
623 51.20 atmosphere 1010 720 > th dose dependent rect. 11 3
628 51.21 wind 9 43200 > th dose independent rect. 5 5
648 51.23 humidity 50 4320 < th dose independent rect. 11 1
669 51.23 wind 9 43200 > th dose dependent rect. 4 5
680 51.24 wind 9 43200 > th dose independent rect. 7 1
684 51.24 wind 9 43200 > th dose dependent rect. 6 1
686 51.24 wind 9 43200 > th dose dependent rect. 5 3
716 51.26 wind 9 43200 < th dose independent rect. 9 1
718 51.26 atmosphere 995 43200 > th dose independent rect. 7 3
722 51.26 humidity 70 4320 < th dose dependent rect. 8 1
734 51.27 wind 9 43200 > th dose independent rect. 9 1
735 51.27 atmosphere 995 43200 > th dose independent rect. 9 1
782 51.29 wind 9 43200 > th dose dependent rect. 9 1
795 51.30 atmosphere 1000 30 > th dose independent rect. 3 23
805 51.31 atmosphere 995 43200 < th dose independent rect. 7 1
818 51.31 humidity 70 4320 > th dose independent rect. 21 12
820 51.31 humidity 50 4320 < th dose dependent rect. 11 1
821 51.31 atmosphere 995 43200 < th dose dependent rect. 7 1
847 51.32 atmosphere 1015 720 < th dose independent rect. 8 16
848 51.32 temperature 20 30 > th dose dependent rect. 2 1
864 51.33 wind 3 30 < th dose dependent rect. 2 1
865 51.33 atmosphere 1005 30 > th dose dependent rect. 2 1
897 51.34 wind 1 30 < th dose independent rect. 2 1
898 51.34 temperature 20 30 > th dose independent rect. 2 1
899 51.34 atmosphere 1005 30 > th dose independent rect. 2 1
905 51.34 wind 9 43200 > th dose dependent sin 7 NA
916 51.35 wind 9 1440 < th dose independent rect. 3 1
917 51.35 temperature 10 1440 > th dose independent rect. 3 1
920 51.35 temperature 30 1440 < th dose independent rect. 3 1
924 51.35 humidity 50 1440 > th dose independent rect. 3 1
933 51.35 atmosphere 995 1440 > th dose independent rect. 3 1
934 51.35 radiation 1 1440 < th dose independent rect. 3 1
956 51.35 atmosphere 1015 720 < th dose independent rect. 17 7
961 51.35 temperature 10 1440 > th dose independent rect. 4 23
968 51.35 radiation 1 1440 < th dose dependent rect. 3 1
994 51.36 humidity 80 30 > th dose independent rect. 2 1