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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0622200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.82 (0.0375) R2 : 0.297
β1 : 1.55 (0.143) R2dD : 0.212 R2D : 0.123
β2 : 0.743 (0.0892) R2dC : 0.109 R2C : 0.0773
β3 : 1.36 (0.194) R2dE : 0.0937 R2E : -0.0116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0844) R2dN8 : 0.00554 R2N8 : -0.0198
σ : 0.689
deviance : 219.01
__
_____
C
peak time of C : 13.3
E
wheather : temperature
threshold : 23.6
memory length : 310
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.5 0.695 4.83 1.48 0.75 1.46 -0.0903 0.606 0.113 13.4 23.47 306 -- --
218.9 0.689 4.82 1.56 0.744 1.36 -0.167 -- 0.131 13.4 23.6 310 -- --
218.52 0.688 4.83 1.47 0.75 1.48 -- 0.677 0.109 13.4 23.37 305 -- --
219.01 0.689 4.82 1.55 0.743 1.36 -- -- 0.129 13.3 23.6 310 -- --
238.42 0.719 4.82 1.55 -- 1.43 -- 0.384 0.192 -- 25.23 848 -- --
242.05 0.729 4.86 1.23 0.654 -- -0.146 -- -0.0855 12.9 -- -- -- --
242.14 0.729 4.86 1.23 0.654 -- -- -- -0.0863 12.9 -- -- -- --
238.49 0.719 4.81 1.6 -- 1.37 -- -- 0.208 -- 26.43 884 -- --
275.93 0.774 4.87 -- 0.645 0.677 -- -- -0.135 13.2 23.7 379 -- --
268.86 0.766 4.88 1.2 -- -- -- -- -0.0985 -- -- -- -- --
281.8 0.785 4.89 -- 0.635 -- -- -- -0.223 12.8 -- -- -- --
297.84 0.804 4.88 -- -- 0.703 -- -- -0.1 -- 25.73 817 -- --
307.01 0.818 4.91 -- -- -- -- -- -0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.70 radiation 1 4320 < th dose dependent rect. 7 1
2 215.06 temperature 10 90 > th dose dependent rect. 2 21
3 215.18 wind 9 43200 < th dose independent rect. 18 16
4 215.30 wind 9 43200 > th dose independent rect. 18 16
10 216.04 radiation 1 4320 < th dose independent rect. 6 2
11 216.06 wind 9 43200 > th dose independent rect. 16 18
12 216.09 radiation 1 4320 > th dose independent rect. 6 2
13 216.09 wind 9 43200 > th dose dependent rect. 18 14
21 216.56 wind 7 43200 > th dose dependent rect. 18 16
23 216.71 wind 5 43200 > th dose dependent rect. 23 1
26 216.77 wind 9 43200 > th dose dependent rect. 16 17
34 217.09 wind 9 43200 < th dose independent rect. 23 2
42 217.42 temperature 25 270 < th dose dependent rect. 6 21
48 217.57 temperature 30 90 < th dose dependent rect. 9 18
57 217.74 wind 9 43200 > th dose dependent sin 11 NA
73 218.07 wind 7 43200 > th dose dependent rect. 20 14
78 218.14 temperature 10 720 > th dose dependent rect. 18 20
91 218.32 wind 9 43200 > th dose independent sin 10 NA
95 218.39 wind 5 43200 > th dose independent rect. 23 1
100 218.45 wind 9 43200 > th dose independent rect. 22 3
114 218.64 wind 9 43200 < th dose independent sin 10 NA
123 218.72 temperature 15 90 > th dose dependent rect. 12 23
134 218.84 wind 7 43200 > th dose independent rect. 6 3
157 219.03 wind 7 43200 > th dose dependent rect. 9 1
164 219.14 wind 9 43200 < th dose independent rect. 18 6
166 219.15 wind 9 43200 > th dose dependent rect. 14 20
198 219.45 temperature 25 270 < th dose dependent rect. 21 22
201 219.47 wind 7 43200 < th dose independent rect. 6 3
203 219.47 wind 9 43200 > th dose dependent rect. 22 5
206 219.50 wind 9 43200 > th dose independent rect. 18 9
209 219.51 humidity 80 14400 > th dose dependent rect. 4 2
213 219.54 wind 9 43200 < th dose independent rect. 18 8
216 219.58 wind 9 43200 > th dose independent rect. 18 6
263 219.81 temperature 25 270 < th dose dependent rect. 13 23
275 219.89 temperature 25 270 < th dose dependent no NA NA
280 219.90 temperature 10 270 > th dose dependent rect. 10 23
284 219.92 radiation 30 4320 < th dose independent rect. 7 1
309 220.06 humidity 80 43200 > th dose dependent rect. 6 2
312 220.07 wind 7 43200 > th dose dependent rect. 6 4
313 220.07 wind 9 43200 > th dose dependent rect. 18 9
326 220.14 wind 9 43200 > th dose dependent rect. 18 6
329 220.15 humidity 80 14400 > th dose dependent rect. 2 5
335 220.19 wind 9 43200 < th dose independent rect. 20 5
346 220.24 temperature 25 270 < th dose dependent rect. 24 23
351 220.30 radiation 30 4320 < th dose independent rect. 1 7
360 220.32 radiation 30 4320 < th dose independent rect. 17 15
367 220.35 wind 9 43200 > th dose independent rect. 20 5
386 220.42 radiation 30 4320 < th dose independent rect. 20 12
415 220.57 temperature 20 90 > th dose independent rect. 3 20
418 220.57 temperature 10 720 > th dose dependent rect. 18 15
427 220.60 wind 7 43200 > th dose dependent rect. 6 1
432 220.62 radiation 1 4320 > th dose independent rect. 6 6
441 220.67 radiation 1 4320 < th dose independent rect. 6 6
460 220.74 temperature 10 720 > th dose dependent rect. 2 12
516 220.97 humidity 90 43200 < th dose independent rect. 6 1
545 221.05 temperature 25 10 < th dose dependent rect. 8 22
549 221.07 temperature 30 270 < th dose dependent rect. 20 16
566 221.11 temperature 15 10 > th dose dependent rect. 13 11
587 221.17 temperature 10 30 > th dose dependent rect. 3 17
596 221.18 temperature 20 90 > th dose independent rect. 12 23
597 221.18 temperature 25 1440 < th dose dependent rect. 2 1
605 221.20 atmosphere 995 43200 > th dose independent rect. 6 7
613 221.22 temperature 25 1440 < th dose dependent rect. 21 2
624 221.23 temperature 25 1440 < th dose dependent rect. 2 4
655 221.29 wind 9 43200 < th dose independent rect. 9 1
662 221.31 temperature 25 1440 < th dose dependent rect. 18 13
676 221.34 temperature 25 1440 < th dose dependent rect. 21 10
698 221.39 temperature 20 1440 < th dose independent rect. 5 2
700 221.39 temperature 10 1440 > th dose dependent rect. 5 1
714 221.41 atmosphere 995 43200 > th dose independent rect. 7 1
753 221.48 temperature 20 10 > th dose independent rect. 13 22
760 221.48 atmosphere 995 43200 < th dose dependent rect. 7 17
763 221.48 temperature 15 10 > th dose dependent rect. 13 22
765 221.49 temperature 25 1440 < th dose dependent rect. 5 1
778 221.51 humidity 90 4320 > th dose dependent rect. 7 1
781 221.52 atmosphere 995 14400 > th dose independent rect. 12 2
798 221.55 atmosphere 995 43200 < th dose dependent rect. 5 4
816 221.57 temperature 30 10 < th dose dependent rect. 16 21
822 221.60 humidity 80 43200 < th dose independent rect. 18 1
825 221.60 atmosphere 995 43200 < th dose dependent rect. 3 16
830 221.61 temperature 25 1440 < th dose dependent sin 11 NA
840 221.62 temperature 10 1440 > th dose dependent rect. 2 5
844 221.63 wind 3 14400 < th dose dependent rect. 1 1
850 221.64 humidity 80 43200 > th dose independent rect. 18 2
872 221.66 atmosphere 995 43200 > th dose independent rect. 6 4
881 221.66 temperature 25 10 < th dose dependent rect. 5 23
890 221.67 temperature 25 10 < th dose dependent rect. 1 23
927 221.73 atmosphere 995 43200 < th dose dependent sin 1 NA
933 221.74 temperature 20 10 > th dose independent rect. 3 21
983 221.78 wind 5 1440 < th dose dependent rect. 2 1