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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0622000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.3 (0.0549) R2 : 0.715
β1 : -2.2 (0.204) R2dD : 0.0781 R2D : 0.0555
β2 : 1.37 (0.266) R2dC : 0.0676 R2C : -0.384
β3 : 5.52 (0.275) R2dE : 1.02 R2E : 0.533
β4 : 7.28 (1.08) R2dD*C : 0.122 R2D*C : -0.0594
β5 : 5.23 (1.05) R2dD*E : 0.0661 R2D*E : -0.0917
γ1 : 0.408 (0.118) R2dN8 : 0.0102 R2N8 : 0.00748
σ : 1.03
deviance : 482.09
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_____
C
peak time of C : 13.9
E
wheather : radiation
threshold : 31.17
memory length : 728
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
482.09 1.03 6.3 -2.2 1.37 5.52 7.28 5.23 0.408 13.9 31.17 728 15 5
508.56 1.05 6.4 -2.06 1.23 5.55 3.64 -- 0.389 14.5 26.88 730 15 5
529.54 1.07 6.34 -2.02 0.532 4.46 -- -0.942 0.265 20.8 10 679 15.2 4.69
530.1 1.07 6.34 -2.07 0.655 4.59 -- -- 0.379 20.5 9.978 679 15.2 4.78
535.27 1.08 6.29 -1.96 -- 5.13 -- -1.04 0.472 -- 10 658 15.2 4.58
671.35 1.21 6.44 -1.99 3.81 -- -0.829 -- 0.145 23.6 -- -- -- --
674.23 1.22 6.44 -1.96 3.81 -- -- -- 0.149 23.5 -- -- -- --
538.97 1.08 6.28 -1.95 -- 5.02 -- -- 0.506 -- 12.28 662 15.1 4.67
630.45 1.17 6.26 -- 0.537 4.59 -- -- 0.677 20 13.73 679 15 5.03
1586.34 1.86 6.35 -1.85 -- -- -- -- 0.191 -- -- -- -- --
774.98 1.3 6.39 -- 3.79 -- -- -- 0.367 23.5 -- -- -- --
637.6 1.18 6.23 -- -- 4.79 -- -- 0.737 -- 17.99 666 14.9 5.08
1676.8 1.91 6.31 -- -- -- -- -- 0.396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 484.56 radiation 30.0 720 < th dose dependent rect. 15 5
7 494.00 radiation 10.0 720 < th dose independent rect. 16 4
12 498.97 radiation 10.0 720 < th dose dependent rect. 16 11
13 499.30 radiation 10.0 720 < th dose dependent rect. 14 14
28 507.29 humidity 60.0 30 > th dose dependent rect. 19 1
30 507.86 radiation 10.0 720 < th dose dependent rect. 9 19
51 512.31 radiation 10.0 720 < th dose independent rect. 15 13
55 513.00 temperature 30.0 720 < th dose independent rect. 17 3
57 513.27 radiation 10.0 720 < th dose independent rect. 16 11
62 513.86 humidity 70.0 720 > th dose independent rect. 15 13
83 518.08 humidity 50.0 720 > th dose dependent rect. 17 3
93 519.99 humidity 80.0 10 > th dose independent rect. 18 2
95 520.25 temperature 30.0 720 < th dose independent rect. 17 11
98 520.81 precipitation 0.1 90 < th dose independent rect. 20 23
99 520.81 precipitation 0.1 90 < th dose dependent rect. 20 23
145 526.35 radiation 10.0 14400 < th dose dependent rect. 20 1
186 529.18 radiation 10.0 720 < th dose dependent sin 15 NA
198 530.09 humidity 70.0 720 > th dose independent rect. 16 4
203 530.31 radiation 1.0 720 < th dose independent rect. 9 19
205 530.39 temperature 10.0 1440 > th dose independent rect. 20 1
208 530.39 temperature 30.0 1440 < th dose independent rect. 20 1
212 530.39 humidity 50.0 1440 > th dose independent rect. 20 1
218 530.39 atmosphere 995.0 1440 > th dose independent rect. 20 1
222 530.39 radiation 1.0 1440 < th dose independent rect. 20 1
242 530.39 temperature 10.0 1440 > th dose independent rect. 21 23
259 531.37 humidity 70.0 720 > th dose independent rect. 11 17
265 531.80 temperature 30.0 90 < th dose independent rect. 18 2
281 532.79 humidity 50.0 720 > th dose dependent rect. 16 12
283 532.93 temperature 30.0 90 < th dose dependent rect. 18 3
297 533.85 radiation 10.0 720 < th dose dependent rect. 9 12
306 534.27 precipitation 0.1 270 < th dose independent rect. 20 11
307 534.27 precipitation 0.1 270 < th dose dependent rect. 20 11
331 536.23 humidity 70.0 720 > th dose independent sin 16 NA
334 536.38 wind 7.0 270 < th dose independent rect. 20 11
343 536.67 temperature 30.0 10 < th dose dependent rect. 19 1
371 537.92 wind 9.0 90 < th dose dependent rect. 19 1
383 538.67 radiation 1.0 270 < th dose independent rect. 7 13
390 538.80 humidity 50.0 720 > th dose dependent rect. 9 19
426 540.27 radiation 1.0 90 < th dose dependent rect. 17 23
449 541.42 temperature 10.0 90 > th dose independent rect. 19 1
452 541.42 humidity 50.0 90 > th dose independent rect. 19 1
454 541.42 atmosphere 995.0 90 > th dose independent rect. 19 1
455 541.42 atmosphere 1010.0 90 < th dose independent rect. 19 1
457 541.42 radiation 1.0 90 < th dose independent rect. 19 1
462 541.42 temperature 10.0 90 > th dose independent rect. 20 23
463 541.42 radiation 1.0 90 < th dose dependent rect. 19 1
468 541.43 wind 9.0 90 < th dose independent rect. 19 1
478 541.70 wind 1.0 90 > th dose independent rect. 19 1
485 541.83 wind 9.0 90 < th dose independent rect. 20 23
494 542.37 radiation 1.0 720 > th dose independent rect. 11 21
503 542.53 humidity 50.0 720 > th dose independent rect. 16 4
504 542.53 radiation 1.0 90 < th dose dependent rect. 17 3
520 543.16 atmosphere 995.0 90 > th dose dependent rect. 19 1
534 543.74 radiation 1.0 720 > th dose independent rect. 12 18
545 544.12 radiation 1.0 90 < th dose dependent sin 20 NA
548 544.17 temperature 10.0 270 > th dose independent rect. 20 11
549 544.17 temperature 30.0 270 < th dose independent rect. 20 11
550 544.17 humidity 50.0 270 > th dose independent rect. 20 11
552 544.17 atmosphere 995.0 270 > th dose independent rect. 20 11
553 544.17 radiation 40.0 270 < th dose independent rect. 20 11
554 544.17 temperature 10.0 270 > th dose independent rect. 7 13
555 544.17 atmosphere 1015.0 270 < th dose independent rect. 7 13
566 544.71 humidity 70.0 90 > th dose dependent rect. 9 11
612 544.96 humidity 50.0 720 > th dose dependent rect. 8 12
616 545.04 radiation 1.0 90 > th dose independent rect. 7 23
623 545.14 radiation 1.0 90 < th dose dependent rect. 15 23
641 545.60 radiation 1.0 720 < th dose independent rect. 22 22
651 545.84 radiation 1.0 90 < th dose independent rect. 17 23
653 545.88 radiation 1.0 90 < th dose dependent rect. 9 23
654 545.89 radiation 1.0 90 < th dose dependent no NA NA
693 546.67 radiation 1.0 90 < th dose dependent rect. 7 23
694 546.70 humidity 70.0 720 > th dose independent rect. 16 19
715 547.26 radiation 10.0 720 < th dose independent sin 15 NA
753 548.08 wind 9.0 270 < th dose independent rect. 7 13
800 549.04 radiation 1.0 90 < th dose independent rect. 5 23
822 549.63 radiation 1.0 90 < th dose independent rect. 7 22
824 549.65 radiation 10.0 720 < th dose dependent rect. 23 21
852 550.22 radiation 1.0 90 < th dose dependent rect. 17 15
884 550.77 precipitation 0.1 720 < th dose independent rect. 12 20
885 550.77 precipitation 0.1 720 < th dose dependent rect. 12 20
891 550.84 radiation 1.0 90 < th dose independent sin 16 NA
927 551.32 radiation 40.0 270 < th dose dependent rect. 20 11
933 551.49 temperature 30.0 270 < th dose dependent rect. 16 4
955 552.01 radiation 1.0 720 > th dose independent rect. 18 22
963 552.17 radiation 1.0 90 < th dose dependent rect. 15 17