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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0620800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0427) R2 : 0.0985
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.98 (0.275) R2dE : 0.104 R2E : 0.0965
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0912) R2dN8 : 0.00197 R2N8 : -0.00526
σ : 0.799
deviance : 294.26
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.18
memory length : 81
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.66
open length of G : 18.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.98 0.778 3.06 0.13 0.105 9.76 -1.08 17.1 -0.00273 6.35 19.89 30 4.95 16.6
293.93 0.805 2.97 0.153 0.233 2.04 -0.438 -- 0.0492 6.83 22.44 54 4.72 18.6
276.52 0.774 3.05 0.158 0.146 9.92 -- 17.4 0.00839 7.67 19.81 30 4.94 16.6
290.69 0.794 2.95 0.229 0.257 2.09 -- -- 0.103 7.45 23.06 67 4.9 18.3
277.19 0.775 3.06 0.127 -- 10.2 -- 18 -0.00164 -- 19.8 30 4.92 16.6
322.84 0.842 3 -0.0798 0.221 -- -0.413 -- -0.0634 7.86 -- -- -- --
323.33 0.842 3 -0.0913 0.223 -- -- -- -0.0633 7.63 -- -- -- --
293.23 0.798 2.96 0.242 -- 2.06 -- -- 0.107 -- 23.12 71 4.83 18.3
291.79 0.796 2.96 -- 0.226 1.93 -- -- 0.0819 7.79 23.12 64 4.9 18.3
326 0.844 3 -0.0883 -- -- -- -- -0.06 -- -- -- -- --
323.55 0.841 2.99 -- 0.222 -- -- -- -0.0531 7.66 -- -- -- --
294.26 0.799 2.96 -- -- 1.98 -- -- 0.104 -- 23.18 81 4.66 18.2
326.21 0.843 3 -- -- -- -- -- -0.0502 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.67 temperature 20 30 < th dose dependent rect. 5 16
7 276.68 temperature 20 30 < th dose dependent rect. 5 12
23 278.83 temperature 20 30 < th dose dependent rect. 5 9
57 282.12 temperature 20 10 < th dose dependent rect. 6 1
71 283.81 temperature 20 30 < th dose dependent sin 23 NA
112 287.07 atmosphere 1015 720 > th dose independent rect. 21 4
113 287.09 atmosphere 1015 720 > th dose dependent rect. 2 22
114 287.11 atmosphere 1015 720 > th dose dependent sin 20 NA
115 287.12 atmosphere 1015 720 > th dose independent rect. 3 19
116 287.15 atmosphere 1015 720 < th dose independent sin 18 NA
118 287.17 atmosphere 1015 720 > th dose independent sin 18 NA
141 287.35 temperature 20 90 < th dose independent rect. 4 16
155 287.77 atmosphere 1015 720 < th dose independent rect. 10 15
157 287.93 atmosphere 1015 720 < th dose independent sin 23 NA
159 288.08 atmosphere 1015 720 > th dose independent sin 23 NA
163 288.38 atmosphere 1015 720 < th dose independent rect. 17 8
183 288.74 atmosphere 1015 720 > th dose dependent rect. 20 5
201 288.78 atmosphere 1015 720 > th dose dependent sin 23 NA
203 288.84 atmosphere 1015 720 > th dose dependent rect. 3 19
207 289.04 wind 1 30 > th dose dependent rect. 5 1
227 290.12 temperature 20 90 < th dose independent rect. 4 12
229 290.20 atmosphere 1015 10 < th dose independent rect. 3 23
230 290.22 temperature 20 90 < th dose independent rect. 4 1
270 291.93 atmosphere 1015 720 < th dose independent rect. 3 23
277 292.14 temperature 20 10 < th dose independent rect. 5 1
299 292.56 atmosphere 1015 720 < th dose independent rect. 16 23
349 293.25 atmosphere 1015 10 < th dose independent sin 8 NA
353 293.25 atmosphere 1015 270 < th dose independent sin 11 NA
354 293.25 atmosphere 1015 10 < th dose independent sin 20 NA
431 293.54 atmosphere 1015 720 > th dose independent rect. 22 1
488 293.58 atmosphere 1015 720 > th dose dependent rect. 22 1
526 293.59 atmosphere 1015 10 > th dose independent sin 7 NA
622 293.59 atmosphere 1015 10 > th dose independent no NA NA
632 293.59 atmosphere 1015 10 < th dose independent no NA NA
642 293.59 atmosphere 1015 10 > th dose independent rect. 23 1