Os11g0620500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os11g0620500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.22 | 0.728 | 3.65 | 0.285 | 0.0303 | -1.59 | -0.915 | -1.96 | -0.13 | 6.07 | 20.52 | 1559 | -- | -- |
| 247.47 | 0.733 | 3.59 | 0.659 | 0.049 | -1.33 | -0.881 | -- | -0.0593 | 6.31 | 20.5 | 1600 | -- | -- |
| 242.16 | 0.725 | 3.64 | 0.262 | 0.0707 | -1.57 | -- | -1.95 | -0.133 | 8.21 | 20.5 | 1552 | -- | -- |
| 249.48 | 0.736 | 3.58 | 0.628 | 0.0411 | -1.33 | -- | -- | -0.0494 | 7.39 | 20.6 | 1612 | -- | -- |
| 242.3 | 0.725 | 3.65 | 0.264 | -- | -1.57 | -- | -1.98 | -0.131 | -- | 20.51 | 1550 | -- | -- |
| 286.03 | 0.793 | 3.66 | 0.0862 | 0.0173 | -- | -0.729 | -- | -0.356 | 5.75 | -- | -- | -- | -- |
| 287.03 | 0.793 | 3.66 | 0.0838 | 0.0715 | -- | -- | -- | -0.352 | 11 | -- | -- | -- | -- |
| 249.58 | 0.736 | 3.59 | 0.647 | -- | -1.32 | -- | -- | -0.0489 | -- | 20.6 | 1672 | -- | -- |
| 253.54 | 0.742 | 3.6 | -- | 0.0631 | -0.919 | -- | -- | -0.0969 | 7.3 | 22.1 | 1462 | -- | -- |
| 287.35 | 0.792 | 3.66 | 0.0822 | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
| 287.22 | 0.793 | 3.66 | -- | 0.0708 | -- | -- | -- | -0.362 | 10.9 | -- | -- | -- | -- |
| 253.36 | 0.741 | 3.58 | -- | -- | -0.837 | -- | -- | -0.0219 | -- | 23.8 | 1352 | -- | -- |
| 287.53 | 0.791 | 3.66 | -- | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.34 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 2 | 228.98 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 5 | 231.10 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 13 | 233.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 15 | 233.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 16 | 233.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 19 | 233.84 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 20 | 233.85 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 26 | 234.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 41 | 234.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 51 | 235.30 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 71 | 236.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 112 | 237.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 196 | 238.93 | temperature | 20 | 1440 | > th | dose independent | sin | 17 | NA |
| 213 | 239.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 249 | 239.82 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 15 |
| 255 | 239.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 282 | 240.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 312 | 240.59 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 352 | 241.08 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 15 |
| 393 | 241.54 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 411 | 241.69 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 412 | 241.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 415 | 241.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 417 | 241.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 471 | 242.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 492 | 242.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 499 | 242.31 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 12 |
| 500 | 242.31 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 547 | 242.57 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 605 | 242.84 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 617 | 242.90 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 629 | 242.90 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 705 | 243.14 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 744 | 243.40 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 1 |
| 745 | 243.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 760 | 243.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 762 | 243.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 791 | 243.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 886 | 244.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |