Os11g0620400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0620400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.41 | 0.232 | 9.42 | 0.952 | 0.182 | 0.7 | -0.44 | -0.081 | -0.564 | 7.89 | 20.4 | 19 | -- | -- |
| 24.42 | 0.23 | 9.42 | 0.964 | 0.182 | 0.696 | -0.447 | -- | -0.559 | 7.89 | 20.4 | 18 | -- | -- |
| 24.94 | 0.233 | 9.42 | 0.923 | 0.184 | 0.719 | -- | -0.187 | -0.57 | 7.5 | 20.58 | 18 | -- | -- |
| 24.98 | 0.233 | 9.42 | 0.948 | 0.187 | 0.721 | -- | -- | -0.564 | 7.48 | 20.4 | 19 | -- | -- |
| 26.75 | 0.241 | 9.43 | 0.938 | -- | 0.701 | -- | -0.146 | -0.561 | -- | 20.3 | 15 | -- | -- |
| 32.56 | 0.268 | 9.39 | 1.11 | 0.28 | -- | -0.217 | -- | -0.44 | 11.7 | -- | -- | -- | -- |
| 32.75 | 0.268 | 9.39 | 1.1 | 0.281 | -- | -- | -- | -0.44 | 11.9 | -- | -- | -- | -- |
| 26.74 | 0.241 | 9.43 | 0.957 | -- | 0.689 | -- | -- | -0.556 | -- | 20.2 | 12 | -- | -- |
| 46.52 | 0.318 | 9.46 | -- | 0.241 | 1.11 | -- | -- | -0.715 | 5.81 | 18.1 | 20 | -- | -- |
| 37.74 | 0.287 | 9.4 | 1.09 | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
| 64.72 | 0.376 | 9.42 | -- | 0.268 | -- | -- | -- | -0.563 | 11.7 | -- | -- | -- | -- |
| 49.15 | 0.327 | 9.46 | -- | -- | 1.15 | -- | -- | -0.697 | -- | 12.54 | 14 | -- | -- |
| 69.24 | 0.388 | 9.43 | -- | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.48 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 7 | 24.07 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 9 | 24.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 11 | 24.24 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 17 | 24.35 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 20 | 24.39 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 21 | 24.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 22 | 24.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 23 | 24.44 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 26 | 24.48 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 27 | 24.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 28 | 24.51 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 33 | 24.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 37 | 24.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 40 | 24.59 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 44 | 24.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 46 | 24.61 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 52 | 24.66 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 55 | 24.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 59 | 24.68 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 20 |
| 77 | 24.73 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 86 | 24.77 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 88 | 24.78 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 99 | 24.80 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 102 | 24.82 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 103 | 24.82 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 19 |
| 115 | 24.85 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 125 | 24.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 215 | 25.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 231 | 25.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 234 | 25.12 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 237 | 25.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 14 |
| 242 | 25.14 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 249 | 25.16 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 291 | 25.20 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 301 | 25.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 332 | 25.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 344 | 25.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 374 | 25.28 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 414 | 25.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 463 | 25.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 610 | 25.38 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 659 | 25.39 | atmosphere | 1000.0 | 14400 | < th | dose dependent | no | NA | NA |
| 722 | 25.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 749 | 25.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 828 | 25.44 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 844 | 25.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 845 | 25.45 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 870 | 25.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 4 |
| 924 | 25.47 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 940 | 25.47 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 963 | 25.47 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 986 | 25.48 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 12 |