Os11g0620100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oligouridylate binding protein.
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Os11g0620100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oligouridylate binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.57 | 0.208 | 12.4 | 0.511 | 0.523 | 0.6 | 0.21 | 0.234 | 0.395 | 16.6 | 0.7859 | 1490 | -- | -- |
| 19.57 | 0.206 | 12.4 | 0.528 | 0.524 | 0.582 | 0.186 | -- | 0.4 | 16.5 | 1.17 | 1497 | -- | -- |
| 19.66 | 0.206 | 12.4 | 0.519 | 0.527 | 0.621 | -- | 0.258 | 0.398 | 16.5 | 0.6721 | 1491 | -- | -- |
| 19.66 | 0.207 | 12.4 | 0.486 | 0.523 | 0.556 | -- | -- | 0.381 | 16.4 | 1.503 | 1508 | -- | -- |
| 32.86 | 0.267 | 12.5 | 0.489 | -- | 0.596 | -- | 0.158 | 0.387 | -- | 1.504 | 1426 | -- | -- |
| 22.89 | 0.224 | 12.5 | 0.425 | 0.504 | -- | 0.267 | -- | 0.328 | 17.1 | -- | -- | -- | -- |
| 23.07 | 0.225 | 12.5 | 0.425 | 0.505 | -- | -- | -- | 0.329 | 17.1 | -- | -- | -- | -- |
| 32.76 | 0.267 | 12.4 | 0.49 | -- | 0.526 | -- | -- | 0.384 | -- | 1.511 | 1435 | -- | -- |
| 26.36 | 0.239 | 12.5 | -- | 0.522 | 0.525 | -- | -- | 0.373 | 16.7 | 1.515 | 1516 | -- | -- |
| 36.46 | 0.282 | 12.5 | 0.407 | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
| 27.83 | 0.247 | 12.5 | -- | 0.498 | -- | -- | -- | 0.282 | 17.1 | -- | -- | -- | -- |
| 38.58 | 0.289 | 12.5 | -- | -- | 0.275 | -- | -- | 0.287 | -- | 37.67 | 4245 | -- | -- |
| 40.83 | 0.298 | 12.5 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.34 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 2 | 18.37 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 5 | 18.50 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 6 | 18.50 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 22 | 18.58 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 25 | 18.61 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 27 | 18.63 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 31 | 18.64 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 32 | 18.64 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 33 | 18.64 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 42 | 18.65 | humidity | 50 | 14400 | < th | dose independent | sin | 11 | NA |
| 54 | 18.66 | humidity | 50 | 14400 | > th | dose independent | sin | 11 | NA |
| 56 | 18.66 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 82 | 18.68 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 102 | 18.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 114 | 18.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 125 | 18.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 133 | 18.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 179 | 18.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 215 | 18.88 | humidity | 80 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 217 | 18.89 | humidity | 60 | 14400 | < th | dose dependent | sin | 12 | NA |
| 218 | 18.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 272 | 18.94 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 409 | 19.04 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 448 | 19.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 521 | 19.13 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 539 | 19.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 542 | 19.15 | temperature | 30 | 1440 | < th | dose dependent | sin | 22 | NA |
| 602 | 19.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 607 | 19.21 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 611 | 19.21 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 631 | 19.22 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 659 | 19.23 | humidity | 90 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 720 | 19.28 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 721 | 19.28 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 739 | 19.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 740 | 19.29 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 757 | 19.30 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 769 | 19.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 791 | 19.31 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 803 | 19.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 833 | 19.34 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 857 | 19.36 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 858 | 19.36 | humidity | 90 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 868 | 19.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 890 | 19.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 891 | 19.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 930 | 19.39 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 971 | 19.41 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |