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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0619800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0405) R2 : 0.235
β1 : 0.226 (0.157) R2dD : 0.00454 R2D : 0.0159
β2 : 0.766 (0.105) R2dC : 0.0926 R2C : 0.0975
β3 : -1.7 (0.405) R2dE : 0.0647 R2E : -0.14
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -28 (3.7) R2dD*E : 0.227 R2D*E : 0.0979
γ1 : 0.0334 (0.0876) R2dN8 : 0.000442 R2N8 : -0.00326
σ : 0.746
deviance : 256.3
__
_____
C
peak time of C : 5.48
E
wheather : humidity
threshold : 86.07
memory length : 38
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.02
open length of G : 0.936

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.34 0.743 3.24 0.229 0.755 -1.62 1.61 -28.4 0.0437 5.72 85.99 38 2 0.872
284.02 0.791 3.27 0.67 0.816 -0.557 1.16 -- 0.0688 5.53 86.01 10 1.3 1.55
256.3 0.746 3.25 0.226 0.766 -1.7 -- -28 0.0334 5.48 86.07 38 2.02 0.936
287.03 0.794 3.27 0.672 0.825 -0.576 -- -- 0.0625 5.21 86 10 1.3 1.53
286.89 0.793 3.26 0.253 -- -1.32 -- -27.8 0.0344 -- 84.9 36 2.14 0.94
286.57 0.794 3.27 0.664 0.782 -- 1.2 -- 0.0855 5.73 -- -- -- --
289.78 0.797 3.27 0.669 0.791 -- -- -- 0.0797 5.39 -- -- -- --
316.43 0.832 3.3 0.694 -- 0.899 -- -- 0.0299 -- 84.9 36 2.14 0.94
298.95 0.81 3.29 -- 0.836 -0.563 -- -- -0.012 5.19 86 10 1.3 1.53
322.4 0.839 3.28 0.696 -- -- -- -- 0.0993 -- -- -- -- --
301.58 0.812 3.29 -- 0.802 -- -- -- 0.00522 5.36 -- -- -- --
325.02 0.84 3.31 -- -- 0.845 -- -- -0.00681 -- 83.02 63 2.2 1.12
335.16 0.855 3.3 -- -- -- -- -- 0.0221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.89 humidity 90.0 30 > th dose independent rect. 2 1
2 251.37 wind 1.0 30 < th dose independent rect. 2 1
3 251.39 humidity 80.0 30 > th dose dependent rect. 2 1
4 252.24 wind 3.0 30 < th dose dependent rect. 2 1
11 253.29 atmosphere 995.0 30 > th dose dependent rect. 2 1
13 253.33 temperature 25.0 30 < th dose independent rect. 2 1
15 253.44 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 253.71 temperature 15.0 30 > th dose dependent rect. 2 1
20 253.72 temperature 20.0 30 > th dose independent rect. 2 1
25 254.39 wind 9.0 30 < th dose independent rect. 2 1
26 254.39 temperature 10.0 30 > th dose independent rect. 2 1
29 254.39 humidity 50.0 30 > th dose independent rect. 2 1
33 254.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 254.39 radiation 1.0 30 < th dose independent rect. 2 1
40 254.39 precipitation 0.1 30 < th dose independent rect. 2 1
41 254.39 temperature 10.0 30 > th dose independent rect. 3 23
42 254.39 radiation 1.0 30 < th dose dependent rect. 2 1
47 254.39 precipitation 0.1 30 < th dose dependent rect. 2 1
53 256.68 temperature 30.0 30 < th dose dependent rect. 2 1
56 256.98 atmosphere 1015.0 30 < th dose dependent rect. 2 1
74 261.19 wind 1.0 30 > th dose independent rect. 2 1
101 263.75 wind 9.0 30 < th dose independent rect. 3 23
111 269.05 radiation 10.0 43200 < th dose dependent rect. 3 1
115 269.28 wind 9.0 1440 < th dose independent rect. 3 1
116 269.28 temperature 10.0 1440 > th dose independent rect. 3 1
119 269.28 temperature 30.0 1440 < th dose independent rect. 3 1
123 269.28 humidity 50.0 1440 > th dose independent rect. 3 1
132 269.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
133 269.28 radiation 1.0 1440 < th dose independent rect. 3 1
153 269.28 temperature 10.0 1440 > th dose independent rect. 4 23
156 269.28 radiation 1.0 1440 < th dose dependent rect. 3 1
170 269.54 atmosphere 995.0 30 > th dose independent rect. 3 23
224 273.55 humidity 90.0 90 < th dose dependent rect. 1 1
245 275.31 wind 3.0 10 < th dose dependent rect. 24 4
255 275.75 humidity 90.0 90 < th dose independent rect. 1 1
256 275.79 wind 3.0 270 < th dose independent rect. 23 2
270 276.42 humidity 50.0 30 > th dose independent rect. 3 23
271 276.42 humidity 80.0 10 > th dose dependent rect. 22 6
272 276.44 atmosphere 1000.0 10 < th dose independent rect. 1 1
279 276.44 atmosphere 1000.0 10 < th dose dependent rect. 1 1
286 276.47 precipitation 0.1 30 < th dose independent rect. 3 23
287 276.47 precipitation 0.1 30 < th dose dependent rect. 3 23
288 276.48 wind 1.0 10 > th dose independent rect. 23 23
291 276.57 humidity 90.0 10 > th dose independent rect. 22 6
292 276.61 wind 1.0 10 < th dose independent rect. 2 7
299 276.80 humidity 80.0 1440 < th dose dependent rect. 7 1
307 276.92 humidity 90.0 10 < th dose independent rect. 2 1
310 277.00 wind 3.0 270 < th dose independent rect. 22 4
320 277.21 temperature 20.0 10 > th dose dependent rect. 22 6
323 277.31 atmosphere 995.0 720 < th dose independent rect. 14 1
366 277.31 atmosphere 995.0 720 < th dose dependent rect. 14 1
442 277.77 humidity 50.0 10 > th dose independent rect. 10 18
448 277.82 radiation 10.0 10 > th dose dependent rect. 17 14
458 277.89 radiation 30.0 90 < th dose independent rect. 4 7
482 278.10 humidity 80.0 1440 < th dose independent rect. 7 1
483 278.12 atmosphere 995.0 720 > th dose independent sin 0 NA
485 278.15 temperature 25.0 720 > th dose independent rect. 15 4
489 278.19 wind 3.0 30 < th dose independent rect. 22 6
490 278.19 wind 1.0 10 < th dose independent rect. 2 10
491 278.19 radiation 40.0 43200 < th dose dependent rect. 23 1
495 278.20 temperature 20.0 10 > th dose dependent rect. 22 1
500 278.24 temperature 25.0 720 < th dose independent rect. 18 12
503 278.27 atmosphere 995.0 720 < th dose independent sin 6 NA
522 278.29 atmosphere 1000.0 270 < th dose dependent rect. 22 1
531 278.30 humidity 50.0 10 > th dose independent rect. 6 22
534 278.31 radiation 10.0 10 > th dose dependent rect. 17 1
551 278.33 humidity 50.0 30 > th dose independent rect. 23 23
579 278.43 humidity 80.0 1440 > th dose independent rect. 7 1
584 278.45 wind 1.0 10 > th dose independent sin 5 NA
586 278.46 humidity 50.0 10 > th dose dependent rect. 11 17
592 278.49 temperature 25.0 10 > th dose independent rect. 22 1
598 278.52 precipitation 0.1 30 < th dose independent rect. 22 1
602 278.52 precipitation 0.1 30 < th dose dependent rect. 22 1
615 278.57 wind 1.0 10 < th dose independent rect. 2 16
623 278.59 humidity 50.0 10 > th dose independent sin 10 NA
631 278.61 humidity 80.0 270 > th dose independent rect. 23 2
634 278.61 temperature 20.0 270 > th dose dependent rect. 18 9
640 278.64 wind 9.0 1440 < th dose independent rect. 23 1
641 278.64 temperature 10.0 1440 > th dose independent rect. 23 1
644 278.64 temperature 30.0 1440 < th dose independent rect. 23 1
648 278.64 humidity 50.0 1440 > th dose independent rect. 23 1
658 278.64 atmosphere 995.0 1440 > th dose independent rect. 23 1
659 278.64 radiation 1.0 1440 < th dose independent rect. 23 1
681 278.64 temperature 10.0 1440 > th dose independent rect. 24 23
684 278.64 radiation 1.0 1440 < th dose dependent rect. 23 1
724 278.77 temperature 20.0 10 < th dose independent rect. 5 1
728 278.77 humidity 90.0 30 < th dose independent rect. 22 1
767 278.85 atmosphere 995.0 720 < th dose dependent sin 7 NA
770 278.86 humidity 80.0 270 > th dose dependent rect. 23 2
772 278.87 humidity 50.0 10 > th dose independent sin 18 NA
777 278.89 temperature 25.0 720 > th dose independent rect. 15 13
785 278.92 wind 3.0 30 < th dose independent rect. 22 1
795 278.97 wind 1.0 10 > th dose independent rect. 24 13
797 278.97 wind 1.0 10 < th dose independent rect. 2 21
839 279.01 humidity 80.0 270 > th dose independent rect. 21 6
847 279.02 humidity 80.0 30 > th dose independent rect. 22 1
861 279.05 wind 5.0 30 < th dose dependent rect. 22 6
868 279.07 temperature 10.0 30 > th dose independent rect. 22 1
870 279.07 temperature 30.0 30 < th dose independent rect. 22 1
871 279.07 humidity 50.0 30 > th dose independent rect. 22 1
874 279.07 atmosphere 995.0 30 > th dose independent rect. 22 1
875 279.07 atmosphere 1010.0 30 < th dose independent rect. 22 1
877 279.07 radiation 1.0 30 < th dose independent rect. 22 1
883 279.07 temperature 10.0 30 > th dose independent rect. 23 23
884 279.07 radiation 1.0 30 < th dose dependent rect. 22 1
889 279.08 humidity 90.0 30 < th dose dependent rect. 22 1
890 279.08 humidity 90.0 10 > th dose dependent rect. 18 10
898 279.09 wind 9.0 30 < th dose dependent rect. 22 1
899 279.09 atmosphere 1015.0 30 < th dose dependent rect. 22 1
900 279.09 humidity 50.0 10 < th dose dependent rect. 17 23
906 279.11 humidity 50.0 30 > th dose dependent rect. 22 1
907 279.11 atmosphere 995.0 30 > th dose dependent rect. 22 1
911 279.12 atmosphere 1005.0 30 > th dose independent rect. 22 1
932 279.15 wind 1.0 30 > th dose dependent rect. 22 1
937 279.17 humidity 50.0 10 < th dose independent rect. 17 23
954 279.20 wind 1.0 30 > th dose independent rect. 22 1