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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0619000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.0415) R2 : 0.576
β1 : -1.6 (0.156) R2dD : 0.108 R2D : 0.0151
β2 : 2.76 (0.121) R2dC : 0.61 R2C : 0.342
β3 : 2.47 (0.274) R2dE : 0.101 R2E : -0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.78 (0.0894) R2dN8 : 0.104 R2N8 : 0.0213
σ : 0.777
deviance : 278.01
__
_____
C
peak time of C : 4.92
E
wheather : temperature
threshold : 2.051
memory length : 20
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.49
open length of G : 22.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
275.37 0.78 5.03 -1.84 2.74 2.29 -1.12 -2.55 -0.881 4.91 5.294 20 3.02 22.9
277.82 0.776 5.01 -1.69 2.74 2.43 -0.762 -- -0.852 4.93 4.517 17 3.12 22.9
277.83 0.776 5.02 -1.76 2.75 2.49 -- -1.51 -0.871 4.92 4.139 21 3.17 22.8
278.01 0.777 5 -1.6 2.76 2.47 -- -- -0.78 4.92 2.051 20 3.49 22.5
555.71 1.1 5.12 -2.11 -- 1.47 -- -2 -1.02 -- 10.37 1277 3.65 23.8
319.28 0.838 4.97 -1.31 2.3 -- -0.798 -- -0.701 5.48 -- -- -- --
320.85 0.839 4.97 -1.31 2.29 -- -- -- -0.698 5.49 -- -- -- --
365.61 0.891 4.81 -1.35 -- 1.82 -- -- -0.269 -- 0.7409 935 16.4 10.9
343.22 0.863 4.97 -- 2.66 2 -- -- -0.602 4.96 1.288 26 3.62 22.3
594.53 1.14 5 -1.23 -- -- -- -- -0.642 -- -- -- -- --
366 0.895 4.94 -- 2.27 -- -- -- -0.552 5.51 -- -- -- --
362.7 0.887 5.01 -- -- 2.63 -- -- -0.585 -- -31.22 842 17 11.4
634.62 1.18 4.97 -- -- -- -- -- -0.505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.35 temperature 10.0 30 > th dose dependent rect. 3 23
4 283.24 radiation 1.0 43200 < th dose dependent rect. 3 1
5 284.03 temperature 15.0 10 > th dose independent rect. 3 23
6 284.04 wind 9.0 1440 > th dose dependent rect. 11 3
8 285.15 wind 9.0 1440 > th dose independent rect. 11 3
20 288.27 temperature 25.0 30 < th dose dependent rect. 2 1
23 288.69 wind 9.0 10 < th dose independent rect. 3 23
31 289.30 wind 9.0 1440 > th dose independent rect. 22 16
44 289.35 wind 9.0 1440 < th dose independent rect. 21 17
45 289.39 precipitation 0.1 14400 > th dose dependent rect. 21 2
48 289.60 precipitation 0.1 14400 > th dose independent rect. 21 1
49 289.63 wind 9.0 1440 < th dose independent rect. 24 14
51 289.71 precipitation 0.1 14400 < th dose independent rect. 21 1
52 289.71 precipitation 0.1 14400 < th dose dependent rect. 21 1
56 290.01 precipitation 0.1 14400 > th dose independent rect. 20 3
58 290.04 wind 9.0 1440 < th dose independent rect. 9 5
63 290.10 precipitation 0.1 14400 < th dose independent rect. 20 3
64 290.10 precipitation 0.1 14400 < th dose dependent rect. 20 3
65 290.14 wind 9.0 1440 > th dose dependent rect. 21 17
135 290.95 wind 9.0 1440 < th dose independent rect. 6 8
138 291.05 wind 1.0 10 < th dose dependent rect. 2 1
139 291.07 wind 9.0 43200 > th dose dependent rect. 17 3
155 291.55 precipitation 0.1 10 < th dose independent rect. 3 23
156 291.55 precipitation 0.1 10 < th dose dependent rect. 3 23
160 291.63 wind 9.0 1440 > th dose independent sin 4 NA
179 291.96 atmosphere 1000.0 10 > th dose independent rect. 2 1
206 292.32 atmosphere 995.0 10 > th dose dependent rect. 2 1
207 292.35 temperature 25.0 10 < th dose independent rect. 2 1
210 292.42 wind 1.0 10 < th dose independent rect. 2 1
214 292.44 humidity 90.0 30 > th dose dependent rect. 2 1
226 292.53 humidity 80.0 10 > th dose independent rect. 2 1
235 292.56 wind 9.0 10 < th dose independent rect. 2 1
236 292.56 temperature 10.0 10 > th dose independent rect. 2 1
239 292.56 humidity 50.0 10 > th dose independent rect. 2 1
243 292.56 atmosphere 1010.0 10 < th dose independent rect. 2 1
245 292.56 radiation 1.0 10 < th dose independent rect. 2 1
250 292.56 precipitation 0.1 10 < th dose independent rect. 2 1
252 292.56 radiation 1.0 10 < th dose dependent rect. 2 1
257 292.56 precipitation 0.1 10 < th dose dependent rect. 2 1
281 292.67 temperature 25.0 90 > th dose dependent rect. 1 2
286 292.75 humidity 80.0 4320 > th dose dependent rect. 9 4
302 292.93 wind 9.0 1440 < th dose independent sin 5 NA
340 292.96 atmosphere 1015.0 30 < th dose dependent rect. 2 1
344 292.97 temperature 10.0 10 > th dose dependent rect. 2 1
348 293.02 wind 5.0 4320 > th dose dependent rect. 20 7
350 293.03 wind 1.0 30 > th dose independent rect. 2 1
353 293.04 atmosphere 1015.0 4320 > th dose dependent rect. 10 10
359 293.11 atmosphere 1015.0 4320 > th dose independent rect. 11 9
360 293.12 wind 9.0 1440 > th dose dependent sin 4 NA
364 293.16 atmosphere 1015.0 4320 < th dose independent rect. 11 9
375 293.26 temperature 20.0 270 > th dose independent rect. 3 19
377 293.28 humidity 80.0 4320 > th dose independent rect. 10 3
381 293.32 temperature 15.0 90 > th dose dependent rect. 3 8
382 293.33 atmosphere 995.0 30 > th dose independent rect. 3 23
423 293.53 temperature 25.0 10 < th dose dependent rect. 24 20
425 293.57 atmosphere 1015.0 4320 < th dose independent rect. 16 4
432 293.64 atmosphere 1015.0 4320 < th dose independent rect. 13 7
468 293.91 wind 9.0 1440 < th dose independent rect. 3 1
469 293.91 temperature 10.0 1440 > th dose independent rect. 3 1
472 293.91 temperature 30.0 1440 < th dose independent rect. 3 1
476 293.91 humidity 50.0 1440 > th dose independent rect. 3 1
485 293.91 atmosphere 995.0 1440 > th dose independent rect. 3 1
486 293.91 radiation 1.0 1440 < th dose independent rect. 3 1
508 293.91 temperature 10.0 1440 > th dose independent rect. 4 23
522 293.95 wind 9.0 43200 > th dose independent rect. 17 4
548 294.06 humidity 80.0 4320 < th dose independent rect. 10 3
552 294.09 atmosphere 1015.0 4320 > th dose dependent rect. 11 2
579 294.32 wind 9.0 43200 < th dose independent rect. 17 4
595 294.45 humidity 90.0 4320 > th dose dependent rect. 8 1
596 294.45 temperature 10.0 1440 > th dose dependent rect. 18 4
597 294.45 temperature 10.0 720 > th dose dependent rect. 12 21
600 294.50 temperature 30.0 1440 < th dose dependent rect. 18 4
605 294.53 temperature 30.0 1440 < th dose dependent rect. 21 1
608 294.55 temperature 30.0 30 < th dose dependent rect. 11 19
657 294.80 atmosphere 1015.0 4320 > th dose independent rect. 13 1
659 294.80 temperature 25.0 4320 < th dose dependent rect. 3 1
671 294.85 atmosphere 1015.0 4320 < th dose independent rect. 13 1
677 294.90 humidity 90.0 4320 > th dose independent rect. 8 2
727 295.06 wind 5.0 4320 > th dose independent rect. 20 5
735 295.08 temperature 10.0 4320 > th dose dependent rect. 3 1
774 295.29 humidity 90.0 4320 < th dose independent rect. 8 2
778 295.30 wind 9.0 43200 > th dose dependent rect. 18 11
804 295.39 temperature 10.0 720 > th dose dependent rect. 17 22
819 295.46 temperature 25.0 10 < th dose dependent rect. 8 23
873 295.64 temperature 25.0 10 > th dose independent rect. 17 18
878 295.65 temperature 15.0 10 > th dose dependent rect. 18 17
887 295.67 temperature 30.0 4320 < th dose independent rect. 14 1
916 295.75 temperature 20.0 90 > th dose independent rect. 3 8
930 295.80 atmosphere 1015.0 10 < th dose independent rect. 3 23
933 295.81 temperature 10.0 720 > th dose dependent rect. 17 16
947 295.86 wind 3.0 4320 > th dose dependent rect. 20 1
958 295.90 wind 5.0 4320 < th dose independent rect. 20 5
960 295.90 radiation 40.0 90 < th dose independent rect. 3 22
985 295.98 temperature 25.0 10 < th dose dependent rect. 22 22
997 296.02 wind 9.0 1440 < th dose independent rect. 10 1