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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0618700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0541) R2 : 0.888
β1 : 0.292 (0.207) R2dD : 0.000364 R2D : -0.249
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.2 (0.112) R2dE : 0.028 R2E : -0.246
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.17 (0.555) R2dD*E : 0.00528 R2D*E : -0.256
γ1 : -6.7 (0.115) R2dN8 : 1.12 R2N8 : 0.855
σ : 1
deviance : 457.44
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.3
memory length : 89
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21
open length of G : 7.99

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
443.12 0.989 11 0.228 0.554 1.16 0.977 -2.66 -6.69 20.1 20.3 88 21 8.05
464.33 1.01 11 0.526 0.447 1.04 -0.0501 -- -6.64 21 20.3 88 21 8.05
445.66 0.983 11 0.204 0.559 1.17 -- -2.54 -6.69 20 20.3 89 21 7.99
464.33 1.01 11 0.527 0.446 1.04 -- -- -6.64 20.9 20.3 88 21 8.05
457.44 1 11 0.292 -- 1.2 -- -2.17 -6.7 -- 20.3 89 21 7.99
514.55 1.06 11 0.616 1.09 -- -0.424 -- -6.57 0.0684 -- -- -- --
515.3 1.06 11 0.634 1.09 -- -- -- -6.57 24 -- -- -- --
474.71 1.02 11 0.513 -- 1.15 -- -- -6.65 -- 20 45 21.2 7.85
471.61 1.02 11 -- 0.437 1.07 -- -- -6.7 20.8 20.3 88 21 8.05
589.99 1.13 11 0.667 -- -- -- -- -6.56 -- -- -- -- --
525.88 1.07 11 -- 1.1 -- -- -- -6.64 0.018 -- -- -- --
481.61 1.03 11 -- -- 1.17 -- -- -6.71 -- 20 45 21.2 7.85
601.73 1.14 11 -- -- -- -- -- -6.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 445.14 temperature 20.0 90 > th dose independent rect. 21 8
2 446.33 temperature 20.0 10 > th dose independent rect. 21 8
8 455.43 temperature 20.0 270 > th dose independent rect. 19 9
20 458.61 temperature 20.0 10 > th dose independent rect. 1 4
41 463.64 temperature 25.0 10 > th dose independent rect. 22 1
42 463.95 temperature 15.0 10 > th dose dependent rect. 21 8
43 463.95 temperature 15.0 90 > th dose dependent rect. 21 8
48 465.06 wind 3.0 30 < th dose independent rect. 22 1
49 465.13 temperature 20.0 30 > th dose dependent rect. 22 1
52 465.25 wind 7.0 30 < th dose dependent rect. 22 1
55 465.37 humidity 80.0 30 > th dose independent rect. 22 1
57 465.47 radiation 40.0 14400 < th dose dependent rect. 23 1
58 465.50 humidity 50.0 30 > th dose dependent rect. 22 1
63 465.57 temperature 10.0 30 > th dose independent rect. 22 1
65 465.57 temperature 30.0 30 < th dose independent rect. 22 1
66 465.57 humidity 50.0 30 > th dose independent rect. 22 1
69 465.57 atmosphere 995.0 30 > th dose independent rect. 22 1
70 465.57 atmosphere 1010.0 30 < th dose independent rect. 22 1
72 465.57 radiation 1.0 30 < th dose independent rect. 22 1
77 465.57 temperature 10.0 30 > th dose independent rect. 23 23
78 465.57 radiation 1.0 30 < th dose dependent rect. 22 1
83 465.58 wind 1.0 30 > th dose independent rect. 22 1
85 465.60 atmosphere 1005.0 30 > th dose independent rect. 22 1
87 465.66 atmosphere 995.0 30 > th dose dependent rect. 22 1
92 465.89 precipitation 0.1 30 < th dose independent rect. 22 1
93 465.89 precipitation 0.1 30 < th dose dependent rect. 22 1
95 466.17 wind 9.0 1440 < th dose independent rect. 23 1
96 466.17 temperature 10.0 1440 > th dose independent rect. 23 1
99 466.17 temperature 30.0 1440 < th dose independent rect. 23 1
103 466.17 humidity 50.0 1440 > th dose independent rect. 23 1
113 466.17 atmosphere 995.0 1440 > th dose independent rect. 23 1
114 466.17 radiation 1.0 1440 < th dose independent rect. 23 1
134 466.17 temperature 10.0 1440 > th dose independent rect. 24 23
137 466.17 radiation 1.0 1440 < th dose dependent rect. 23 1
142 466.22 humidity 90.0 30 < th dose independent rect. 22 1
146 466.48 atmosphere 1015.0 30 < th dose dependent rect. 22 1
164 468.07 wind 1.0 30 > th dose dependent rect. 22 1
166 468.43 humidity 90.0 30 < th dose dependent rect. 22 1
167 468.63 temperature 20.0 270 > th dose independent rect. 1 1
171 468.67 temperature 30.0 30 < th dose dependent rect. 22 1
176 469.18 temperature 20.0 10 > th dose dependent rect. 1 4
203 471.17 temperature 25.0 30 > th dose independent rect. 4 1
208 471.40 temperature 20.0 90 > th dose independent sin 10 NA
262 472.83 temperature 25.0 90 > th dose dependent rect. 4 1
278 473.60 humidity 90.0 10 < th dose independent rect. 4 1
288 474.19 wind 9.0 30 < th dose independent rect. 23 23
298 474.78 temperature 20.0 270 > th dose independent rect. 10 17
302 475.01 wind 1.0 30 > th dose dependent rect. 4 1
315 475.75 temperature 20.0 90 > th dose independent rect. 21 19
319 475.91 temperature 20.0 270 > th dose dependent rect. 1 1
329 476.65 temperature 20.0 10 > th dose independent rect. 10 19
337 476.85 temperature 20.0 270 < th dose independent rect. 21 8
338 476.87 temperature 20.0 270 > th dose independent rect. 8 20
343 476.95 temperature 25.0 270 < th dose independent rect. 21 12
344 476.98 temperature 20.0 270 < th dose independent rect. 20 10
366 477.51 temperature 20.0 90 < th dose independent sin 10 NA
367 477.59 temperature 20.0 270 < th dose independent sin 12 NA
375 477.67 temperature 20.0 30 > th dose independent rect. 13 16
378 477.71 temperature 20.0 90 < th dose independent rect. 23 8
525 480.44 temperature 20.0 10 < th dose independent rect. 22 10
535 480.53 temperature 20.0 10 < th dose independent rect. 20 13
603 481.21 wind 1.0 30 > th dose independent rect. 5 23
607 481.25 temperature 20.0 270 > th dose independent rect. 19 20
638 481.63 atmosphere 1005.0 10 > th dose independent rect. 16 10
659 481.85 atmosphere 995.0 10 > th dose dependent rect. 16 10
667 481.94 temperature 10.0 270 > th dose dependent sin 10 NA
681 482.05 temperature 20.0 10 > th dose independent rect. 17 12
712 482.34 humidity 80.0 4320 < th dose dependent rect. 1 1
744 482.68 temperature 20.0 30 > th dose independent rect. 21 15
746 482.68 temperature 30.0 270 < th dose dependent rect. 20 12
819 483.31 radiation 1.0 30 < th dose independent rect. 21 21
830 483.38 radiation 1.0 30 < th dose dependent rect. 21 21
866 483.82 wind 1.0 90 < th dose independent rect. 23 5
868 483.82 radiation 1.0 30 < th dose independent rect. 19 23
887 484.00 wind 3.0 30 < th dose dependent rect. 22 7
890 484.04 atmosphere 1015.0 10 < th dose dependent rect. 10 19
893 484.05 humidity 80.0 4320 < th dose dependent rect. 22 1
899 484.13 temperature 30.0 90 < th dose dependent rect. 23 12
903 484.16 wind 1.0 90 < th dose independent rect. 11 17
906 484.18 temperature 25.0 30 > th dose dependent sin 11 NA
926 484.33 radiation 1.0 30 < th dose dependent rect. 19 23
948 484.49 wind 1.0 30 < th dose independent rect. 21 7
959 484.53 radiation 10.0 720 < th dose independent rect. 14 6
963 484.55 wind 1.0 90 < th dose independent rect. 14 14
976 484.62 wind 3.0 30 < th dose dependent rect. 12 17
980 484.67 atmosphere 1010.0 90 < th dose independent rect. 21 8
993 484.76 temperature 25.0 10 > th dose independent rect. 16 6