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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0615300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0594) R2 : 0.0841
β1 : 1.26 (0.268) R2dD : 0.0776 R2D : -0.0223
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.23 (0.23) R2dE : 0.115 R2E : 0.00863
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.107 (0.147) R2dN8 : 0.00219 R2N8 : -0.0137
σ : 1.05
deviance : 509.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.38
memory length : 8974
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
503.9 1.05 3.39 1.64 0.172 1.2 -0.36 -3.21 0.0834 3.47 26 5176 -- --
508.59 1.05 3.44 1.39 0.214 1.35 -0.106 -- 0.168 3.2 21.2 9020 -- --
503.33 1.04 3.39 1.66 0.163 1.26 -- -3.38 0.0659 2.55 26.4 5180 -- --
507.92 1.05 3.45 1.25 0.176 1.23 -- -- 0.103 4.81 21.39 8966 -- --
504.76 1.05 3.39 1.67 -- 1.23 -- -3.44 0.0686 -- 26.43 5145 -- --
539.27 1.09 3.55 0.334 0.165 -- -0.54 -- -0.354 5.41 -- -- -- --
539.99 1.09 3.55 0.333 0.161 -- -- -- -0.352 5.31 -- -- -- --
509.54 1.05 3.45 1.26 -- 1.23 -- -- 0.107 -- 21.38 8974 -- --
523.23 1.07 3.51 -- 0.188 0.669 -- -- -0.169 4.24 26.6 8040 -- --
541.35 1.09 3.55 0.338 -- -- -- -- -0.348 -- -- -- -- --
542.91 1.09 3.56 -- 0.167 -- -- -- -0.389 5.24 -- -- -- --
524.61 1.07 3.51 -- -- 0.665 -- -- -0.177 -- 26.47 7650 -- --
544.37 1.09 3.56 -- -- -- -- -- -0.385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 493.41 radiation 1.0 10 < th dose dependent rect. 6 1
3 496.19 wind 1.0 43200 < th dose dependent rect. 20 1
4 496.64 wind 9.0 43200 > th dose dependent rect. 19 2
5 496.78 wind 9.0 43200 > th dose independent rect. 19 2
6 497.27 wind 9.0 43200 < th dose independent rect. 19 2
10 499.41 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
20 500.08 radiation 1.0 43200 < th dose dependent rect. 19 6
32 500.45 atmosphere 995.0 43200 > th dose independent rect. 16 6
39 500.61 atmosphere 995.0 43200 < th dose independent rect. 17 5
42 500.69 atmosphere 995.0 43200 < th dose dependent rect. 16 6
51 500.84 wind 9.0 43200 > th dose dependent rect. 18 5
71 501.26 atmosphere 995.0 43200 > th dose independent rect. 15 8
72 501.26 atmosphere 995.0 43200 < th dose independent rect. 15 9
75 501.28 wind 5.0 43200 < th dose independent rect. 19 2
80 501.35 humidity 80.0 43200 < th dose dependent rect. 3 6
106 501.71 atmosphere 1000.0 43200 < th dose independent rect. 3 1
123 501.94 radiation 1.0 10 < th dose independent rect. 6 1
125 501.94 temperature 20.0 4320 > th dose independent rect. 23 2
150 502.23 atmosphere 1000.0 43200 > th dose independent rect. 3 1
174 502.46 temperature 20.0 4320 < th dose independent rect. 24 1
192 502.60 atmosphere 1005.0 43200 < th dose dependent sin 10 NA
197 502.64 atmosphere 1005.0 43200 < th dose dependent rect. 14 16
216 502.69 atmosphere 1005.0 43200 < th dose independent rect. 5 1
254 502.86 atmosphere 1005.0 43200 < th dose dependent rect. 15 1
264 502.88 precipitation 0.1 43200 > th dose dependent rect. 17 1
293 502.98 temperature 30.0 90 < th dose dependent rect. 12 22
304 503.02 precipitation 0.1 43200 > th dose independent rect. 17 1
310 503.03 atmosphere 995.0 43200 < th dose dependent rect. 15 8
331 503.10 precipitation 0.1 43200 < th dose independent rect. 17 1
332 503.10 precipitation 0.1 43200 < th dose dependent rect. 17 1
364 503.20 atmosphere 1005.0 43200 < th dose dependent rect. 23 18
394 503.26 wind 5.0 43200 > th dose independent rect. 16 6
436 503.33 atmosphere 1005.0 43200 < th dose dependent no NA NA
478 503.40 temperature 25.0 4320 < th dose dependent rect. 24 1
487 503.41 precipitation 0.1 43200 > th dose dependent rect. 20 1
531 503.48 wind 9.0 43200 > th dose dependent rect. 18 11
560 503.55 humidity 90.0 43200 > th dose independent rect. 21 2
563 503.57 atmosphere 1010.0 43200 < th dose dependent rect. 7 1
570 503.58 wind 5.0 43200 > th dose independent rect. 15 10
583 503.61 humidity 90.0 43200 > th dose dependent rect. 21 1
597 503.64 wind 9.0 43200 < th dose dependent rect. 20 1
598 503.65 atmosphere 995.0 43200 < th dose independent rect. 10 6
604 503.66 atmosphere 995.0 43200 > th dose independent rect. 10 6
612 503.67 radiation 1.0 1440 < th dose dependent rect. 17 12
613 503.68 atmosphere 995.0 43200 > th dose independent rect. 11 4
634 503.70 radiation 1.0 14400 < th dose dependent rect. 4 1
651 503.74 radiation 1.0 14400 < th dose dependent rect. 2 3
666 503.77 atmosphere 995.0 43200 > th dose independent rect. 18 3
670 503.79 atmosphere 995.0 43200 < th dose independent rect. 18 1
676 503.79 atmosphere 995.0 43200 < th dose dependent rect. 18 1
720 503.87 atmosphere 995.0 43200 > th dose independent rect. 12 1
725 503.88 temperature 20.0 14400 < th dose independent rect. 21 2
740 503.91 radiation 1.0 1440 < th dose dependent rect. 17 3
742 503.92 wind 5.0 43200 < th dose independent rect. 16 6
744 503.92 atmosphere 1005.0 43200 < th dose dependent rect. 18 1
748 503.93 wind 5.0 43200 < th dose independent rect. 15 8
761 503.95 atmosphere 995.0 43200 < th dose independent rect. 13 2
765 503.95 radiation 1.0 1440 < th dose dependent rect. 17 9
791 504.01 atmosphere 995.0 43200 > th dose independent rect. 10 11
816 504.04 atmosphere 1000.0 43200 > th dose independent rect. 20 1
844 504.08 wind 5.0 43200 < th dose independent rect. 15 10
881 504.13 temperature 10.0 4320 > th dose dependent rect. 1 1
892 504.15 atmosphere 995.0 43200 > th dose independent rect. 18 1
927 504.20 atmosphere 995.0 43200 < th dose dependent rect. 15 1
935 504.21 atmosphere 995.0 43200 < th dose dependent rect. 14 3
969 504.28 atmosphere 995.0 43200 > th dose independent rect. 16 1
972 504.28 wind 5.0 43200 > th dose independent rect. 11 14
974 504.28 atmosphere 995.0 43200 < th dose dependent rect. 14 5
988 504.30 wind 5.0 43200 > th dose independent rect. 11 12