Os11g0615100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : A49-like RNA polymerase I associated factor family protein.
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Os11g0615100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : A49-like RNA polymerase I associated factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.78 | 0.335 | 11.4 | 1.42 | 1.3 | 0.683 | 0.34 | -0.58 | 0.159 | 17.5 | 10 | 226 | -- | -- |
| 51.87 | 0.335 | 11.4 | 1.42 | 1.28 | 0.686 | 0.0869 | -- | 0.166 | 17.5 | 10.01 | 220 | -- | -- |
| 50.93 | 0.332 | 11.4 | 1.43 | 1.3 | 0.683 | -- | -0.493 | 0.156 | 17.5 | 10.01 | 220 | -- | -- |
| 51.61 | 0.335 | 11.4 | 1.42 | 1.29 | 0.704 | -- | -- | 0.171 | 17.6 | 10 | 200 | -- | -- |
| 60.3 | 0.362 | 11.3 | 1.39 | -- | 1.74 | -- | -0.447 | 0.073 | -- | 0.1716 | 543 | -- | -- |
| 60.69 | 0.365 | 11.3 | 1.54 | 1.76 | -- | -0.035 | -- | 0.23 | 16.3 | -- | -- | -- | -- |
| 60.7 | 0.365 | 11.3 | 1.54 | 1.76 | -- | -- | -- | 0.23 | 16.3 | -- | -- | -- | -- |
| 57.29 | 0.353 | 11.3 | 1.43 | -- | 1.77 | -- | -- | 0.174 | -- | 0.3596 | 545 | -- | -- |
| 105.72 | 0.479 | 11.4 | -- | 1.28 | 0.869 | -- | -- | 0.0578 | 18 | 10.06 | 225 | -- | -- |
| 227.01 | 0.704 | 11.3 | 1.47 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 123.23 | 0.519 | 11.4 | -- | 1.73 | -- | -- | -- | 0.0587 | 16.3 | -- | -- | -- | -- |
| 106.97 | 0.482 | 11.3 | -- | -- | 1.85 | -- | -- | 0.0739 | -- | 0.008975 | 548 | -- | -- |
| 284.06 | 0.787 | 11.4 | -- | -- | -- | -- | -- | 0.0205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.77 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 40.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 4 | 41.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 14 | 42.20 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 18 | 42.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 19 | 42.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 20 | 42.40 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 22 | 42.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 29 | 42.66 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 39 | 42.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 40 | 42.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 41 | 42.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 50 | 42.93 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 60 | 43.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 62 | 43.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 63 | 43.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 66 | 43.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 67 | 43.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 68 | 43.18 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 71 | 43.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 73 | 43.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 85 | 43.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 87 | 43.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 92 | 43.67 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 94 | 43.67 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 103 | 43.76 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 104 | 43.82 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 113 | 44.00 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 207 | 44.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 208 | 44.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 213 | 44.58 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 216 | 44.61 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 220 | 44.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 223 | 44.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 241 | 44.80 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 243 | 44.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 245 | 44.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 246 | 44.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 248 | 44.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 249 | 44.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 255 | 44.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 300 | 45.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 312 | 45.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 320 | 45.26 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 336 | 45.28 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 339 | 45.29 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 341 | 45.29 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 5 |
| 342 | 45.29 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 348 | 45.31 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 353 | 45.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 357 | 45.36 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 365 | 45.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 380 | 45.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 381 | 45.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 384 | 45.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 390 | 45.48 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 391 | 45.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 394 | 45.48 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 396 | 45.48 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 397 | 45.48 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 398 | 45.48 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 411 | 45.54 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 413 | 45.54 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 414 | 45.54 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 416 | 45.54 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 417 | 45.54 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 419 | 45.54 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 420 | 45.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 441 | 45.65 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 457 | 45.72 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 459 | 45.73 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 478 | 45.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 485 | 45.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 510 | 45.93 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 526 | 45.95 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 560 | 46.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 580 | 46.08 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 582 | 46.09 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 604 | 46.16 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 636 | 46.18 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 644 | 46.19 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 667 | 46.24 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 671 | 46.25 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 685 | 46.29 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 704 | 46.32 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 712 | 46.34 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 741 | 46.39 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 753 | 46.43 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 766 | 46.45 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 779 | 46.50 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 790 | 46.51 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 795 | 46.51 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 801 | 46.53 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 830 | 46.60 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 840 | 46.62 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 901 | 46.77 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 956 | 46.87 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |