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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0613900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0232) R2 : 0.204
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.528 (0.0488) R2dN8 : 0.263 R2N8 : 0.204
σ : 0.437
deviance : 87.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.02 0.426 2.8 0.0329 0.39 -0.473 -0.63 0.767 0.503 23.2 21.18 66 -- --
83.33 0.425 2.8 0.0227 0.236 -0.41 -0.124 -- 0.505 22.8 37.61 102 -- --
82.78 0.424 2.79 0.0851 0.377 -0.502 -- 0.514 0.51 23.7 23.27 97 -- --
82.65 0.423 2.8 0.0302 0.355 -0.464 -- -- 0.504 23.6 23.2 105 -- --
84.7 0.429 2.79 0.0542 -- -0.216 -- 0.241 0.528 -- 33.69 106 -- --
86.2 0.435 2.78 0.0585 0.153 -- -0.107 -- 0.538 16 -- -- -- --
86.24 0.435 2.78 0.0572 0.152 -- -- -- 0.538 16 -- -- -- --
84.84 0.429 2.79 0.0478 -- -0.23 -- -- 0.521 -- 38.87 106 -- --
82.67 0.423 2.8 -- 0.36 -0.468 -- -- 0.501 23.7 23.07 106 -- --
87.5 0.437 2.78 0.051 -- -- -- -- 0.534 -- -- -- -- --
86.32 0.435 2.79 -- 0.151 -- -- -- 0.531 16 -- -- -- --
84.9 0.429 2.79 -- -- -0.228 -- -- 0.515 -- 38.53 106 -- --
87.57 0.437 2.78 -- -- -- -- -- 0.528 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.53 radiation 20.0 90 > th dose independent rect. 13 22
2 77.84 radiation 1.0 90 > th dose dependent rect. 13 22
5 78.85 temperature 25.0 30 > th dose dependent rect. 20 15
7 79.03 atmosphere 1010.0 10 < th dose independent rect. 22 13
8 79.09 temperature 25.0 30 > th dose dependent rect. 22 13
11 79.22 wind 9.0 720 < th dose independent rect. 13 2
12 79.34 wind 7.0 720 < th dose independent rect. 1 2
14 79.36 temperature 10.0 720 > th dose independent rect. 1 2
15 79.36 temperature 30.0 720 < th dose independent rect. 1 2
16 79.36 humidity 50.0 720 > th dose independent rect. 1 2
19 79.36 atmosphere 995.0 720 > th dose independent rect. 1 2
20 79.36 radiation 1.0 720 < th dose independent rect. 1 2
25 79.36 temperature 10.0 720 > th dose independent rect. 3 22
26 79.36 radiation 1.0 720 < th dose dependent rect. 1 2
31 79.40 temperature 10.0 720 > th dose independent rect. 13 2
32 79.40 atmosphere 1015.0 720 < th dose independent rect. 13 2
33 79.40 temperature 10.0 720 > th dose independent rect. 15 22
34 79.42 precipitation 0.1 720 < th dose independent rect. 1 2
35 79.42 precipitation 0.1 720 < th dose dependent rect. 1 2
36 79.43 wind 1.0 720 > th dose independent rect. 13 2
37 79.46 precipitation 0.1 720 < th dose independent rect. 13 2
38 79.46 precipitation 0.1 720 < th dose dependent rect. 13 2
40 79.56 temperature 25.0 30 > th dose dependent rect. 24 11
42 79.66 atmosphere 995.0 720 > th dose independent rect. 13 2
43 79.66 temperature 25.0 30 > th dose dependent rect. 14 21
45 79.69 radiation 40.0 90 > th dose independent rect. 13 22
49 79.71 radiation 10.0 10 > th dose independent rect. 14 21
50 79.72 humidity 50.0 90 > th dose independent rect. 21 14
51 79.73 wind 9.0 90 < th dose independent rect. 21 14
52 79.73 temperature 10.0 90 > th dose dependent rect. 17 14
54 79.76 radiation 1.0 720 > th dose independent rect. 13 2
55 79.77 radiation 40.0 90 < th dose dependent rect. 17 14
56 79.78 temperature 10.0 90 > th dose independent rect. 11 10
57 79.78 atmosphere 1015.0 90 < th dose independent rect. 11 10
58 79.78 temperature 10.0 90 > th dose independent rect. 21 14
59 79.78 atmosphere 995.0 90 > th dose independent rect. 21 14
60 79.81 temperature 25.0 30 > th dose dependent rect. 7 4
62 79.82 wind 9.0 90 < th dose independent rect. 7 10
63 79.86 precipitation 0.1 90 < th dose independent rect. 21 14
64 79.86 radiation 10.0 10 > th dose independent rect. 13 23
65 79.86 precipitation 0.1 90 < th dose dependent rect. 21 14
70 79.93 humidity 50.0 90 > th dose independent rect. 11 10
72 79.95 wind 9.0 90 < th dose independent rect. 17 14
74 79.96 humidity 50.0 30 > th dose independent rect. 11 23
75 79.97 temperature 10.0 90 > th dose independent rect. 7 10
76 79.97 atmosphere 1015.0 90 < th dose independent rect. 7 10
77 79.97 precipitation 0.1 90 < th dose independent rect. 7 10
78 79.97 temperature 10.0 90 > th dose independent rect. 17 14
79 79.97 radiation 30.0 90 < th dose independent rect. 17 14
81 79.97 precipitation 0.1 90 < th dose dependent rect. 7 10
84 80.00 humidity 50.0 90 > th dose independent rect. 17 14
88 80.04 radiation 40.0 720 < th dose dependent rect. 17 10
96 80.09 atmosphere 995.0 90 > th dose independent rect. 7 10
97 80.09 wind 9.0 90 < th dose independent rect. 13 12
101 80.11 atmosphere 1015.0 720 < th dose independent rect. 1 2
102 80.11 wind 9.0 90 < th dose independent rect. 11 10
113 80.14 precipitation 0.1 90 < th dose independent rect. 11 10
115 80.14 precipitation 0.1 90 < th dose dependent rect. 11 10
117 80.15 temperature 10.0 90 > th dose independent rect. 1 12
118 80.15 temperature 10.0 90 > th dose independent rect. 13 12
119 80.15 atmosphere 995.0 90 > th dose independent rect. 1 12
120 80.15 atmosphere 1015.0 90 < th dose independent rect. 1 12
121 80.15 atmosphere 995.0 90 > th dose independent rect. 17 14
122 80.16 radiation 20.0 720 < th dose independent rect. 17 10
123 80.19 precipitation 0.1 90 < th dose independent rect. 1 12
124 80.19 precipitation 0.1 90 < th dose dependent rect. 1 12
125 80.20 wind 5.0 10 < th dose independent rect. 16 1
126 80.20 wind 9.0 720 < th dose dependent rect. 1 2
127 80.21 wind 1.0 30 > th dose dependent rect. 10 1
131 80.23 humidity 50.0 10 < th dose independent rect. 16 1
132 80.24 temperature 25.0 30 > th dose independent rect. 8 3
133 80.24 wind 9.0 720 < th dose independent rect. 5 10
134 80.24 wind 9.0 90 < th dose independent rect. 1 12
135 80.25 temperature 10.0 720 > th dose independent rect. 17 10
138 80.25 temperature 10.0 720 > th dose independent rect. 3 14
140 80.27 atmosphere 1015.0 720 < th dose independent rect. 3 14
142 80.28 wind 9.0 720 < th dose independent rect. 3 22
143 80.29 radiation 20.0 30 > th dose independent rect. 10 1
145 80.30 wind 1.0 30 < th dose independent rect. 10 1
146 80.30 temperature 25.0 30 > th dose independent rect. 10 1
147 80.30 temperature 10.0 1440 > th dose independent rect. 11 1
151 80.30 atmosphere 995.0 1440 > th dose independent rect. 11 1
154 80.30 precipitation 0.1 1440 < th dose independent rect. 11 1
156 80.30 temperature 30.0 90 < th dose independent rect. 21 14
157 80.30 temperature 10.0 1440 > th dose independent rect. 12 23
160 80.30 wind 1.0 30 < th dose dependent rect. 10 1
161 80.30 precipitation 0.1 1440 < th dose dependent rect. 11 1
163 80.31 radiation 40.0 30 < th dose independent rect. 10 1
164 80.31 precipitation 0.1 720 < th dose independent rect. 5 10
166 80.31 temperature 20.0 30 > th dose dependent rect. 10 1
168 80.31 precipitation 0.1 720 < th dose dependent rect. 5 10
170 80.32 humidity 80.0 30 < th dose independent rect. 10 1
171 80.32 atmosphere 1010.0 30 < th dose independent rect. 10 1
174 80.32 temperature 10.0 720 > th dose independent rect. 5 10
175 80.32 atmosphere 1015.0 720 < th dose independent rect. 5 10
177 80.32 temperature 10.0 720 > th dose independent rect. 15 14
178 80.32 temperature 10.0 30 > th dose dependent rect. 10 1
181 80.33 wind 1.0 30 > th dose independent rect. 10 1
182 80.33 wind 9.0 30 < th dose independent rect. 10 1
184 80.33 temperature 10.0 30 > th dose independent rect. 10 1
187 80.33 temperature 30.0 30 < th dose independent rect. 10 1
188 80.33 humidity 50.0 30 > th dose independent rect. 10 1
192 80.33 atmosphere 995.0 30 > th dose independent rect. 10 1
196 80.33 precipitation 0.1 30 < th dose independent rect. 10 1
198 80.33 precipitation 0.1 90 < th dose independent rect. 13 12
199 80.33 radiation 40.0 10 < th dose independent rect. 22 13
200 80.33 temperature 10.0 30 > th dose independent rect. 11 23
201 80.33 humidity 80.0 30 < th dose dependent rect. 10 1
203 80.33 atmosphere 995.0 30 > th dose dependent rect. 10 1
205 80.33 radiation 1.0 30 > th dose dependent rect. 10 1
206 80.33 precipitation 0.1 30 < th dose dependent rect. 10 1
207 80.33 temperature 10.0 90 > th dose dependent rect. 7 10
208 80.33 precipitation 0.1 90 < th dose dependent rect. 13 12
210 80.34 precipitation 0.1 90 < th dose independent rect. 17 14
213 80.34 precipitation 0.1 90 < th dose dependent rect. 17 14
217 80.36 humidity 50.0 30 > th dose dependent rect. 10 1
218 80.36 atmosphere 1015.0 30 < th dose dependent rect. 10 1
222 80.37 radiation 1.0 90 > th dose independent rect. 7 10
223 80.37 radiation 40.0 720 < th dose independent rect. 15 14
224 80.37 wind 5.0 30 < th dose dependent rect. 10 1
228 80.37 humidity 50.0 720 > th dose dependent rect. 1 2
233 80.38 radiation 40.0 30 < th dose dependent rect. 10 1
234 80.39 radiation 40.0 270 < th dose independent rect. 9 10
235 80.39 humidity 50.0 10 < th dose dependent rect. 16 1
237 80.40 wind 1.0 90 > th dose independent rect. 11 10
260 80.43 wind 9.0 720 < th dose independent rect. 21 18
261 80.43 temperature 30.0 10 > th dose dependent rect. 16 1
264 80.44 temperature 30.0 10 > th dose independent rect. 16 1
266 80.44 temperature 20.0 90 > th dose independent rect. 17 14
276 80.46 temperature 10.0 720 > th dose independent rect. 15 6
277 80.46 temperature 10.0 720 > th dose independent rect. 21 18
281 80.47 wind 9.0 720 < th dose independent rect. 17 10
293 80.48 humidity 50.0 10 > th dose independent rect. 11 11
298 80.49 radiation 40.0 720 < th dose independent rect. 15 6
309 80.52 temperature 10.0 270 > th dose independent rect. 9 11
310 80.52 atmosphere 1015.0 270 < th dose independent rect. 9 11
317 80.53 temperature 10.0 1440 > th dose independent rect. 12 11
320 80.53 temperature 10.0 1440 > th dose independent rect. 23 13
323 80.53 atmosphere 995.0 1440 > th dose independent rect. 23 13
324 80.53 wind 9.0 720 < th dose independent rect. 3 14
331 80.54 radiation 40.0 90 < th dose dependent rect. 11 20
333 80.55 humidity 50.0 720 > th dose independent rect. 13 2
337 80.56 precipitation 0.1 30 < th dose independent rect. 11 23
342 80.56 precipitation 0.1 30 < th dose dependent rect. 11 23
347 80.58 atmosphere 995.0 90 > th dose independent rect. 13 12
352 80.59 wind 9.0 720 < th dose independent rect. 3 6
353 80.59 temperature 10.0 720 > th dose independent rect. 3 6
354 80.59 humidity 50.0 720 > th dose independent rect. 3 6
355 80.59 atmosphere 995.0 720 > th dose independent rect. 3 6
359 80.59 temperature 10.0 720 > th dose independent rect. 9 18
361 80.59 radiation 30.0 10 < th dose dependent rect. 17 14
362 80.60 atmosphere 995.0 90 > th dose independent rect. 11 10
372 80.61 atmosphere 995.0 720 > th dose independent rect. 5 10
374 80.62 atmosphere 1015.0 720 < th dose independent rect. 3 6
382 80.65 precipitation 0.1 720 < th dose independent rect. 3 22
385 80.65 precipitation 0.1 720 < th dose dependent rect. 3 22
389 80.67 precipitation 0.1 720 < th dose independent rect. 3 14
390 80.67 precipitation 0.1 720 < th dose dependent rect. 3 14
394 80.69 wind 1.0 90 > th dose independent rect. 7 10
398 80.69 temperature 15.0 90 > th dose dependent rect. 1 6
405 80.72 wind 7.0 10 < th dose dependent rect. 16 1
410 80.73 atmosphere 1000.0 30 > th dose independent rect. 11 23
419 80.74 atmosphere 995.0 720 > th dose independent rect. 21 18
422 80.75 wind 9.0 30 < th dose independent rect. 11 23
428 80.77 radiation 10.0 10 > th dose independent rect. 16 1
434 80.78 atmosphere 995.0 90 > th dose dependent rect. 7 10
437 80.79 precipitation 0.1 720 < th dose independent rect. 3 6
438 80.79 wind 9.0 10 < th dose independent rect. 7 10
439 80.79 atmosphere 1005.0 10 > th dose dependent rect. 2 5
440 80.79 precipitation 0.1 720 < th dose dependent rect. 3 6
441 80.80 atmosphere 995.0 14400 > th dose independent rect. 19 3
452 80.82 radiation 20.0 90 < th dose dependent rect. 1 21
468 80.88 temperature 30.0 720 < th dose independent rect. 3 6
469 80.88 precipitation 0.1 270 < th dose independent rect. 9 11
474 80.88 precipitation 0.1 270 < th dose dependent rect. 9 11
478 80.89 humidity 50.0 720 > th dose independent rect. 17 10
479 80.89 wind 9.0 10 < th dose independent rect. 17 14
482 80.91 radiation 1.0 1440 > th dose independent rect. 11 1
484 80.91 atmosphere 1015.0 90 < th dose independent rect. 13 12
495 80.93 wind 9.0 720 < th dose independent rect. 15 22
499 80.94 wind 1.0 10 > th dose independent rect. 7 10
510 80.95 humidity 50.0 270 > th dose independent rect. 5 10
518 80.96 wind 9.0 270 < th dose independent rect. 9 11
531 80.98 radiation 10.0 10 < th dose independent rect. 1 21
536 80.99 precipitation 0.1 720 < th dose independent rect. 21 18
539 80.99 precipitation 0.1 720 < th dose dependent rect. 21 18
546 81.03 atmosphere 1005.0 10 < th dose independent rect. 16 1
547 81.03 wind 9.0 720 < th dose independent rect. 15 6
548 81.03 temperature 10.0 720 > th dose independent rect. 1 11
549 81.03 atmosphere 995.0 720 > th dose independent rect. 1 11
550 81.03 temperature 10.0 720 > th dose independent rect. 12 13
551 81.03 wind 9.0 720 < th dose independent rect. 15 14
558 81.04 radiation 40.0 270 < th dose independent rect. 20 13
559 81.04 atmosphere 1010.0 10 < th dose independent rect. 22 19
571 81.06 radiation 30.0 90 < th dose dependent rect. 9 22
576 81.08 atmosphere 995.0 14400 > th dose independent rect. 7 1
582 81.08 radiation 10.0 90 < th dose independent rect. 1 21
588 81.10 wind 1.0 720 > th dose independent rect. 15 6
599 81.14 radiation 40.0 720 < th dose independent rect. 3 6
613 81.16 humidity 50.0 90 > th dose dependent rect. 1 12
618 81.17 radiation 20.0 90 < th dose dependent rect. 23 23
619 81.18 wind 9.0 720 < th dose independent rect. 1 11
621 81.19 humidity 50.0 90 > th dose independent rect. 1 12
626 81.20 temperature 30.0 90 < th dose independent rect. 11 10
629 81.21 atmosphere 995.0 14400 > th dose independent rect. 5 3
630 81.21 humidity 50.0 10 > th dose independent rect. 17 14
634 81.22 temperature 10.0 720 > th dose independent rect. 15 8
636 81.22 temperature 10.0 720 > th dose independent rect. 23 16
637 81.22 radiation 10.0 10 > th dose independent rect. 16 19
651 81.25 wind 9.0 720 < th dose independent rect. 13 11
656 81.26 wind 9.0 720 < th dose independent rect. 12 13
659 81.27 radiation 40.0 90 < th dose dependent rect. 11 10
664 81.28 radiation 20.0 90 < th dose independent rect. 11 20
669 81.29 precipitation 0.1 270 < th dose independent rect. 15 14
673 81.29 precipitation 0.1 270 < th dose dependent rect. 15 14
679 81.30 radiation 20.0 90 < th dose dependent rect. 13 18
680 81.31 wind 1.0 270 > th dose independent rect. 9 11
690 81.32 wind 9.0 720 < th dose independent rect. 24 13
704 81.35 temperature 10.0 720 > th dose independent rect. 20 5
705 81.35 temperature 30.0 720 < th dose independent rect. 20 5
706 81.35 humidity 50.0 720 > th dose independent rect. 20 5
709 81.35 atmosphere 995.0 720 > th dose independent rect. 20 5
710 81.35 radiation 1.0 720 < th dose independent rect. 20 5
717 81.35 wind 1.0 90 > th dose independent rect. 13 12
723 81.35 temperature 10.0 720 > th dose independent rect. 1 19
725 81.35 radiation 1.0 720 < th dose dependent rect. 20 5
732 81.36 wind 9.0 720 < th dose independent rect. 20 5
734 81.36 wind 9.0 10 < th dose independent rect. 14 12
747 81.39 atmosphere 1015.0 720 < th dose independent rect. 15 6
749 81.39 precipitation 0.1 10 < th dose independent rect. 14 12
751 81.39 atmosphere 995.0 720 > th dose independent rect. 23 16
752 81.39 precipitation 0.1 10 < th dose dependent rect. 14 12
761 81.41 atmosphere 1005.0 270 > th dose dependent rect. 2 1
776 81.43 radiation 10.0 10 < th dose independent rect. 17 21
780 81.44 wind 9.0 720 < th dose independent rect. 3 8
782 81.44 temperature 10.0 10 > th dose independent rect. 2 12
784 81.44 temperature 10.0 10 > th dose independent rect. 14 12
785 81.44 atmosphere 995.0 10 > th dose independent rect. 2 12
786 81.44 atmosphere 1015.0 10 < th dose independent rect. 2 12
790 81.45 temperature 10.0 720 > th dose independent rect. 8 5
791 81.45 atmosphere 995.0 720 > th dose independent rect. 8 5
792 81.45 atmosphere 1015.0 720 < th dose independent rect. 8 5
800 81.45 temperature 10.0 720 > th dose independent rect. 13 19
804 81.46 humidity 50.0 720 > th dose independent rect. 3 8
807 81.46 atmosphere 995.0 90 > th dose dependent rect. 13 12
819 81.47 atmosphere 1005.0 30 > th dose dependent rect. 7 4
823 81.48 atmosphere 995.0 14400 > th dose independent rect. 3 5
824 81.48 precipitation 0.1 720 < th dose independent rect. 8 5
827 81.48 precipitation 0.1 720 < th dose dependent rect. 8 5
836 81.50 wind 1.0 10 > th dose independent rect. 22 13
842 81.51 wind 9.0 30 < th dose dependent rect. 17 14
843 81.51 temperature 10.0 270 > th dose dependent rect. 15 14
847 81.53 atmosphere 995.0 14400 > th dose independent rect. 3 1
849 81.53 temperature 10.0 720 > th dose independent rect. 3 8
850 81.53 atmosphere 995.0 720 > th dose independent rect. 3 8
855 81.53 temperature 10.0 720 > th dose independent rect. 11 16
857 81.53 radiation 20.0 90 < th dose independent rect. 9 22
861 81.53 humidity 90.0 30 < th dose dependent rect. 22 13
863 81.54 humidity 80.0 90 > th dose independent rect. 1 6
867 81.54 atmosphere 995.0 10 > th dose independent rect. 14 12
887 81.55 wind 1.0 90 > th dose independent rect. 21 14
907 81.56 wind 3.0 10 < th dose dependent rect. 8 1
912 81.57 radiation 40.0 10 < th dose independent rect. 14 12
914 81.57 humidity 50.0 270 > th dose independent rect. 15 14
917 81.58 precipitation 0.1 720 < th dose independent rect. 13 12
919 81.58 wind 9.0 720 < th dose independent rect. 13 19
922 81.58 precipitation 0.1 720 < th dose dependent rect. 13 12
923 81.59 radiation 20.0 30 > th dose independent rect. 8 3
928 81.60 atmosphere 995.0 720 > th dose independent rect. 15 8
931 81.60 humidity 50.0 720 > th dose independent rect. 1 11
932 81.60 atmosphere 1015.0 720 < th dose independent rect. 1 11
934 81.60 precipitation 0.1 10 < th dose independent rect. 2 12
937 81.60 temperature 10.0 720 > th dose dependent rect. 1 2
940 81.60 precipitation 0.1 10 < th dose dependent rect. 2 12
945 81.62 wind 9.0 10 < th dose independent rect. 2 12
953 81.63 radiation 1.0 10 > th dose dependent rect. 16 1
955 81.63 radiation 20.0 10 < th dose dependent rect. 17 19
956 81.64 precipitation 0.1 720 < th dose independent rect. 20 5
960 81.64 precipitation 0.1 720 < th dose dependent rect. 20 5
970 81.65 precipitation 0.1 720 < th dose independent rect. 1 11
975 81.65 precipitation 0.1 720 < th dose dependent rect. 1 11