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Os11g0611600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.04 (0.0246) R2 : 0.592
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.515 (0.0613) R2dC : 0.0635 R2C : -0.0948
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.26 (0.0517) R2dN8 : 0.687 R2N8 : 0.528
σ : 0.463
deviance : 98.08
__
_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.26 0.446 9.07 0.15 0.563 0.317 0.272 -0.127 1.12 20.8 1006 308 -- --
90.34 0.443 9.07 0.148 0.565 0.317 0.277 -- 1.12 20.8 1006 311 -- --
90.5 0.443 9.07 0.144 0.562 0.311 -- -0.147 1.12 20.8 1006 304 -- --
90.61 0.443 9.07 0.144 0.564 0.313 -- -- 1.12 20.8 1006 311 -- --
107.48 0.483 9.07 0.17 -- 0.307 -- -0.0706 1.11 -- 1006 1142 -- --
97.49 0.463 9.04 0.139 0.514 -- 0.198 -- 1.27 21 -- -- -- --
97.62 0.463 9.04 0.133 0.515 -- -- -- 1.27 20.9 -- -- -- --
107.48 0.483 9.06 0.173 -- 0.305 -- -- 1.13 -- 1006 1157 -- --
91.14 0.445 9.08 -- 0.57 0.308 -- -- 1.12 20.8 1006 311 -- --
112.76 0.496 9.02 0.133 -- -- -- -- 1.27 -- -- -- -- --
98.08 0.463 9.04 -- 0.515 -- -- -- 1.26 20.9 -- -- -- --
108.17 0.484 9.06 -- -- 0.298 -- -- 1.11 -- 1006 1143 -- --
113.23 0.497 9.03 -- -- -- -- -- 1.26 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.31 temperature 20.0 270 > th dose independent rect. 4 3
2 80.78 temperature 20.0 270 > th dose independent rect. 3 5
7 82.30 atmosphere 995.0 30 > th dose dependent rect. 9 20
8 82.37 temperature 15.0 270 > th dose dependent rect. 3 5
10 82.53 temperature 15.0 270 > th dose dependent rect. 4 3
24 83.32 temperature 30.0 90 < th dose independent rect. 9 6
34 83.49 atmosphere 1005.0 30 > th dose independent rect. 9 20
42 83.72 temperature 30.0 270 < th dose independent rect. 7 20
55 83.97 temperature 30.0 270 < th dose independent rect. 7 7
78 84.51 temperature 15.0 270 > th dose independent rect. 3 14
85 84.58 radiation 40.0 90 < th dose independent rect. 14 19
94 84.79 radiation 40.0 10 < th dose independent rect. 15 18
98 84.82 radiation 30.0 90 < th dose independent rect. 5 4
102 84.85 precipitation 0.1 30 < th dose independent rect. 15 18
103 84.85 precipitation 0.1 30 < th dose dependent rect. 15 18
107 84.91 atmosphere 995.0 30 > th dose dependent rect. 9 6
108 84.92 humidity 80.0 270 > th dose independent rect. 3 4
112 84.93 atmosphere 1000.0 30 > th dose independent rect. 9 6
136 85.08 temperature 10.0 1440 > th dose independent rect. 10 6
139 85.08 temperature 10.0 1440 > th dose independent rect. 16 18
143 85.09 radiation 10.0 270 < th dose independent rect. 4 2
145 85.10 temperature 10.0 30 > th dose independent rect. 9 6
148 85.10 atmosphere 1015.0 30 < th dose independent rect. 9 6
150 85.10 temperature 10.0 30 > th dose independent rect. 15 18
151 85.11 precipitation 0.1 30 < th dose independent rect. 9 6
154 85.11 precipitation 0.1 30 < th dose dependent rect. 9 6
155 85.12 temperature 30.0 270 < th dose independent rect. 9 3
156 85.12 radiation 20.0 270 < th dose independent rect. 3 4
173 85.16 wind 9.0 270 < th dose independent rect. 7 20
177 85.19 radiation 1.0 30 > th dose independent rect. 15 18
181 85.23 humidity 50.0 270 > th dose dependent rect. 3 4
182 85.23 temperature 10.0 270 > th dose dependent rect. 3 14
190 85.26 wind 9.0 30 < th dose independent rect. 15 18
194 85.29 humidity 70.0 90 > th dose independent rect. 5 4
195 85.29 wind 1.0 90 > th dose independent rect. 9 5
234 85.43 wind 9.0 270 < th dose independent rect. 3 4
235 85.43 temperature 10.0 270 > th dose independent rect. 3 4
237 85.43 temperature 30.0 270 < th dose independent rect. 3 4
238 85.43 humidity 50.0 270 > th dose independent rect. 3 4
240 85.43 atmosphere 995.0 270 > th dose independent rect. 3 4
241 85.43 atmosphere 1015.0 270 < th dose independent rect. 3 4
243 85.43 temperature 10.0 270 > th dose independent rect. 7 20
251 85.47 precipitation 0.1 270 < th dose independent rect. 3 4
252 85.47 humidity 50.0 4320 > th dose independent rect. 5 5
254 85.47 radiation 1.0 30 > th dose independent rect. 18 15
257 85.47 precipitation 0.1 270 < th dose dependent rect. 3 4
260 85.49 temperature 10.0 1440 > th dose independent rect. 5 5
263 85.49 atmosphere 995.0 1440 > th dose independent rect. 5 5
264 85.49 atmosphere 1015.0 1440 < th dose independent rect. 5 5
265 85.49 temperature 10.0 1440 > th dose independent rect. 10 19
270 85.51 atmosphere 995.0 90 > th dose independent rect. 9 20
276 85.54 radiation 1.0 30 > th dose independent rect. 5 4
289 85.56 atmosphere 995.0 270 > th dose independent rect. 7 20
301 85.61 wind 9.0 90 < th dose independent rect. 5 4
302 85.61 temperature 10.0 90 > th dose independent rect. 5 4
305 85.61 atmosphere 995.0 90 > th dose independent rect. 5 4
306 85.61 atmosphere 1015.0 90 < th dose independent rect. 5 4
307 85.61 temperature 10.0 90 > th dose independent rect. 9 20
316 85.62 atmosphere 995.0 30 > th dose independent rect. 15 18
319 85.63 precipitation 0.1 90 < th dose independent rect. 5 4
321 85.63 precipitation 0.1 90 < th dose dependent rect. 5 4
329 85.66 humidity 50.0 30 > th dose independent rect. 9 6
331 85.66 wind 9.0 90 < th dose independent rect. 9 20
332 85.66 radiation 40.0 270 < th dose dependent rect. 3 4
334 85.67 wind 1.0 10 > th dose independent rect. 15 18
339 85.69 atmosphere 1010.0 270 < th dose independent rect. 4 2
360 85.73 wind 9.0 270 < th dose independent rect. 6 22
381 85.79 temperature 30.0 30 < th dose independent rect. 5 4
394 85.80 radiation 1.0 30 > th dose independent rect. 9 6
399 85.81 radiation 10.0 270 < th dose dependent rect. 4 2
401 85.82 wind 9.0 30 < th dose independent rect. 9 6
402 85.82 temperature 30.0 270 < th dose independent rect. 22 14
423 85.88 wind 1.0 10 > th dose independent rect. 5 4
436 85.93 wind 9.0 270 < th dose independent rect. 4 2
437 85.93 temperature 10.0 270 > th dose independent rect. 4 2
439 85.93 temperature 30.0 270 < th dose independent rect. 4 2
440 85.93 humidity 50.0 270 > th dose independent rect. 4 2
443 85.93 atmosphere 995.0 270 > th dose independent rect. 4 2
450 85.93 temperature 10.0 270 > th dose independent rect. 6 22
452 85.93 temperature 10.0 270 > th dose dependent rect. 3 17
458 85.95 atmosphere 1015.0 30 < th dose dependent rect. 15 18
473 86.01 precipitation 0.1 270 < th dose independent rect. 4 2
474 86.01 precipitation 0.1 270 < th dose dependent rect. 4 2
510 86.08 radiation 20.0 30 < th dose dependent sin 12 NA
512 86.09 temperature 10.0 30 > th dose dependent rect. 5 15
516 86.10 precipitation 0.1 270 < th dose independent rect. 3 14
521 86.10 precipitation 0.1 270 < th dose dependent rect. 3 14
537 86.12 wind 9.0 90 < th dose dependent rect. 5 4
547 86.15 humidity 50.0 90 > th dose independent rect. 9 20
557 86.19 precipitation 0.1 270 < th dose independent rect. 7 20
560 86.19 precipitation 0.1 270 < th dose dependent rect. 7 20
564 86.20 precipitation 0.1 30 < th dose independent rect. 9 20
565 86.20 precipitation 0.1 30 < th dose dependent rect. 9 20
567 86.21 wind 9.0 270 < th dose independent rect. 17 10
568 86.21 atmosphere 995.0 30 > th dose dependent rect. 5 4
575 86.24 humidity 50.0 270 > th dose independent rect. 7 20
597 86.31 radiation 1.0 270 < th dose dependent rect. 6 21
599 86.33 radiation 10.0 270 < th dose independent rect. 17 10
600 86.33 humidity 50.0 10 > th dose independent rect. 15 18
601 86.33 temperature 30.0 270 < th dose dependent rect. 7 7
620 86.39 radiation 30.0 270 < th dose dependent rect. 17 10
655 86.48 temperature 10.0 270 > th dose independent rect. 17 10
660 86.48 atmosphere 1015.0 270 < th dose independent rect. 3 14
666 86.50 atmosphere 995.0 270 > th dose independent rect. 17 10
681 86.53 temperature 30.0 270 < th dose dependent rect. 9 1
691 86.55 precipitation 0.1 270 < th dose independent rect. 12 21
693 86.55 precipitation 0.1 270 < th dose dependent rect. 12 21
735 86.61 atmosphere 1015.0 90 < th dose independent rect. 9 19
758 86.65 wind 1.0 270 > th dose independent rect. 7 6
763 86.66 humidity 50.0 270 > th dose independent rect. 17 10
769 86.67 atmosphere 995.0 270 > th dose dependent rect. 9 3
784 86.68 atmosphere 995.0 270 > th dose dependent rect. 9 1
811 86.71 atmosphere 1015.0 270 < th dose independent rect. 7 20
827 86.73 atmosphere 1000.0 270 > th dose independent rect. 9 1
833 86.74 wind 1.0 270 > th dose independent rect. 9 3
834 86.74 precipitation 0.1 270 < th dose independent rect. 12 10
840 86.74 wind 9.0 270 < th dose dependent rect. 3 4
841 86.74 precipitation 0.1 270 < th dose dependent rect. 12 10
855 86.77 temperature 10.0 270 > th dose independent rect. 9 3
856 86.77 atmosphere 995.0 270 > th dose independent rect. 9 3
857 86.77 atmosphere 1015.0 270 < th dose independent rect. 9 3
860 86.77 temperature 10.0 270 > th dose independent rect. 12 21
864 86.78 atmosphere 1015.0 30 < th dose independent rect. 15 18
882 86.80 atmosphere 1000.0 270 > th dose independent rect. 7 7
895 86.81 radiation 1.0 270 < th dose independent rect. 7 20
898 86.81 temperature 30.0 30 < th dose dependent rect. 9 6
924 86.88 precipitation 0.1 270 < th dose independent rect. 9 3
935 86.88 temperature 10.0 270 > th dose independent rect. 7 7
937 86.88 atmosphere 1015.0 270 < th dose independent rect. 7 7
944 86.88 precipitation 0.1 270 < th dose dependent rect. 9 3
945 86.88 atmosphere 1015.0 270 < th dose dependent rect. 3 4
965 86.92 radiation 40.0 270 < th dose independent rect. 8 19