Os11g0610900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Fragment).
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Os11g0610900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.24 | 0.399 | 9.88 | 1.37 | 1.36 | 0.562 | 0.26 | -1.22 | -0.303 | 17.9 | 19.3 | 60 | -- | -- |
| 77.13 | 0.409 | 9.9 | 1.28 | 1.37 | 0.819 | 0.335 | -- | -0.336 | 17.9 | 19.06 | 104 | -- | -- |
| 72.31 | 0.399 | 9.88 | 1.36 | 1.35 | 0.545 | -- | -1.26 | -0.306 | 17.9 | 19.32 | 60 | -- | -- |
| 77.54 | 0.41 | 9.91 | 1.27 | 1.38 | 0.82 | -- | -- | -0.333 | 18 | 19.07 | 104 | -- | -- |
| 166.48 | 0.604 | 9.86 | 1.3 | -- | 0.414 | -- | -1.41 | -0.349 | -- | 19.32 | 60 | -- | -- |
| 93.23 | 0.453 | 9.93 | 1.02 | 1.33 | -- | 0.289 | -- | -0.442 | 18.3 | -- | -- | -- | -- |
| 93.42 | 0.453 | 9.93 | 1.02 | 1.33 | -- | -- | -- | -0.442 | 18.3 | -- | -- | -- | -- |
| 170.84 | 0.609 | 9.88 | 1.23 | -- | 1.09 | -- | -- | -0.367 | -- | 18.1 | 39 | -- | -- |
| 115.17 | 0.503 | 9.94 | -- | 1.34 | 0.365 | -- | -- | -0.498 | 18.1 | 20.2 | 103 | -- | -- |
| 185.34 | 0.636 | 9.91 | 0.984 | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
| 120.81 | 0.514 | 9.96 | -- | 1.32 | -- | -- | -- | -0.555 | 18.3 | -- | -- | -- | -- |
| 167.99 | 0.604 | 9.96 | -- | -- | -0.876 | -- | -- | -0.702 | -- | 27.51 | 388 | -- | -- |
| 210.87 | 0.678 | 9.93 | -- | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.85 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 2 | 71.15 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 4 | 71.29 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 11 | 71.66 | temperature | 20 | 90 | < th | dose independent | sin | 15 | NA |
| 26 | 72.08 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 32 | 72.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 38 | 72.29 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 14 |
| 51 | 72.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 63 | 72.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 66 | 72.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 69 | 72.71 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 72 | 72.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 76 | 72.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 13 |
| 77 | 72.74 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 22 |
| 84 | 72.79 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 97 | 72.86 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 100 | 72.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 107 | 72.90 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 112 | 72.95 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 116 | 72.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 229 | 73.41 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 265 | 73.49 | temperature | 20 | 30 | > th | dose independent | rect. | 1 | 23 |
| 267 | 73.49 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 268 | 73.49 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 273 | 73.50 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 281 | 73.52 | temperature | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 289 | 73.53 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 314 | 73.61 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 345 | 73.68 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 364 | 73.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 437 | 73.95 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 467 | 74.02 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 614 | 74.41 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 621 | 74.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 667 | 74.54 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 735 | 74.67 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 23 |
| 754 | 74.72 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 829 | 74.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 917 | 75.13 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 953 | 75.21 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 23 |
| 955 | 75.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 20 |