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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0609600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 14-3-3 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.24 (0.0474) R2 : 0.623
β1 : -4.15 (0.181) R2dD : 0.509 R2D : 0.425
β2 : 1.46 (0.121) R2dC : 0.123 R2C : 0.148
β3 : -1.81 (0.233) R2dE : 0.0631 R2E : -0.0147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0901 (0.108) R2dN8 : 0.000962 R2N8 : -0.0105
σ : 0.87
deviance : 349.08
__
_____
C
peak time of C : 16.6
E
wheather : temperature
threshold : 23.96
memory length : 499
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.94 0.864 5.25 -4.29 1.5 -1.65 -1.88 0.93 -0.119 16.6 24.32 556 -- --
338.85 0.857 5.23 -4.14 1.47 -1.74 -2 -- -0.0879 16.6 24.1 536 -- --
346.72 0.867 5.26 -4.37 1.47 -1.6 -- 1.4 -0.139 16.6 24.4 518 -- --
349.08 0.87 5.24 -4.15 1.46 -1.81 -- -- -0.0901 16.6 23.96 499 -- --
400.69 0.932 5.29 -4.76 -- -2.88 -- 3.05 -0.281 -- 40.68 290 -- --
382.97 0.917 5.16 -3.69 1.6 -- -2.13 -- 0.245 17 -- -- -- --
394.43 0.93 5.17 -3.69 1.58 -- -- -- 0.235 17 -- -- -- --
404 0.936 5.24 -4.33 -- -2.86 -- -- -0.191 -- 47.27 259 -- --
750.05 1.28 5.08 -- 1.68 0.714 -- -- 0.654 16.9 18.7 108 -- --
526.17 1.07 5.15 -3.75 -- -- -- -- 0.194 -- -- -- -- --
753.01 1.28 5.07 -- 1.65 -- -- -- 0.646 16.9 -- -- -- --
614.72 1.15 4.87 -- -- 2.7 -- -- 1.42 -- 35.74 47520 -- --
896.39 1.4 5.06 -- -- -- -- -- 0.61 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.53 precipitation 0.1 14400 > th dose independent rect. 17 1
2 322.72 wind 5.0 14400 > th dose independent rect. 15 1
3 323.79 precipitation 0.1 14400 < th dose independent rect. 17 1
4 323.79 precipitation 0.1 14400 < th dose dependent rect. 17 1
5 324.23 wind 5.0 14400 < th dose independent rect. 15 1
7 325.48 temperature 10.0 30 > th dose dependent rect. 21 23
10 327.78 temperature 25.0 270 < th dose dependent rect. 24 20
21 330.15 precipitation 0.1 14400 > th dose dependent rect. 17 1
24 330.73 wind 3.0 14400 < th dose independent rect. 23 1
27 330.79 humidity 80.0 14400 > th dose dependent rect. 13 1
33 331.53 humidity 80.0 14400 > th dose dependent rect. 12 3
34 331.54 precipitation 0.1 14400 > th dose dependent rect. 20 2
40 332.20 temperature 15.0 30 > th dose dependent rect. 23 21
46 332.59 atmosphere 1005.0 14400 > th dose independent rect. 23 1
48 332.80 humidity 80.0 14400 > th dose independent rect. 13 3
54 333.30 humidity 80.0 14400 > th dose independent rect. 13 1
60 333.76 humidity 70.0 1440 > th dose dependent rect. 17 1
65 334.01 wind 3.0 14400 > th dose independent rect. 23 1
66 334.06 wind 1.0 14400 > th dose dependent rect. 23 1
67 334.07 temperature 25.0 1440 < th dose dependent rect. 17 1
78 334.55 humidity 70.0 1440 < th dose independent rect. 16 1
86 334.81 wind 3.0 14400 > th dose dependent rect. 14 2
88 334.92 humidity 70.0 1440 > th dose independent rect. 15 3
91 335.03 humidity 80.0 14400 < th dose independent rect. 14 1
102 335.33 wind 5.0 14400 < th dose independent rect. 11 8
104 335.44 wind 1.0 14400 > th dose dependent rect. 1 1
105 335.54 humidity 90.0 720 > th dose dependent rect. 7 19
107 335.58 precipitation 0.1 14400 > th dose independent rect. 7 1
108 335.58 precipitation 0.1 14400 > th dose dependent rect. 7 1
114 335.78 atmosphere 1005.0 14400 < th dose independent rect. 23 2
138 336.57 wind 1.0 14400 > th dose dependent rect. 23 4
145 336.76 humidity 70.0 1440 < th dose independent rect. 14 4
154 336.98 wind 3.0 14400 < th dose independent rect. 1 1
155 336.99 precipitation 0.1 14400 < th dose independent rect. 5 3
156 336.99 precipitation 0.1 14400 < th dose dependent rect. 5 3
164 337.09 precipitation 0.1 14400 > th dose independent rect. 5 3
167 337.12 atmosphere 1005.0 4320 > th dose independent rect. 20 1
176 337.32 precipitation 0.1 14400 > th dose dependent rect. 5 3
177 337.35 atmosphere 995.0 14400 > th dose independent rect. 12 1
197 337.61 precipitation 0.1 14400 < th dose independent rect. 7 1
198 337.61 precipitation 0.1 14400 < th dose dependent rect. 7 1
205 337.72 wind 3.0 14400 > th dose independent rect. 23 3
208 337.78 wind 3.0 14400 > th dose independent rect. 1 1
211 337.81 humidity 70.0 1440 > th dose independent rect. 14 8
212 337.82 humidity 70.0 1440 > th dose independent rect. 14 10
214 337.83 humidity 70.0 1440 > th dose independent rect. 14 12
220 337.86 humidity 70.0 1440 > th dose independent rect. 14 15
237 338.12 humidity 90.0 1440 < th dose dependent rect. 17 1
247 338.24 precipitation 0.1 14400 > th dose independent rect. 20 2
250 338.27 wind 3.0 14400 < th dose independent rect. 23 3
262 338.43 precipitation 0.1 14400 < th dose independent rect. 21 1
263 338.43 precipitation 0.1 14400 < th dose dependent rect. 21 1
277 338.64 temperature 25.0 720 < th dose dependent rect. 7 21
287 338.83 humidity 70.0 1440 > th dose dependent rect. 4 15
300 339.04 wind 9.0 14400 < th dose dependent rect. 1 2
317 339.17 humidity 60.0 1440 > th dose dependent rect. 15 4
322 339.24 humidity 90.0 720 > th dose dependent sin 21 NA
331 339.29 humidity 70.0 1440 > th dose dependent rect. 7 12
343 339.40 wind 9.0 14400 < th dose independent rect. 5 6
346 339.42 temperature 25.0 1440 < th dose dependent rect. 11 8
368 339.54 wind 9.0 14400 < th dose dependent rect. 23 1
383 339.71 humidity 80.0 14400 > th dose independent rect. 10 1
384 339.71 humidity 90.0 1440 < th dose dependent rect. 15 4
387 339.72 humidity 70.0 1440 > th dose dependent sin 0 NA
397 339.79 radiation 1.0 4320 < th dose dependent rect. 6 11
409 339.84 temperature 25.0 720 < th dose dependent rect. 13 23
428 339.95 humidity 90.0 720 > th dose dependent sin 17 NA
434 339.98 humidity 90.0 720 > th dose independent rect. 6 20
445 340.04 temperature 25.0 720 < th dose dependent no NA NA
458 340.11 radiation 40.0 1440 < th dose dependent rect. 18 6
467 340.13 atmosphere 1005.0 10 > th dose dependent rect. 16 7
476 340.16 wind 9.0 14400 < th dose dependent rect. 23 4
506 340.37 humidity 70.0 1440 > th dose dependent rect. 23 20
523 340.42 atmosphere 995.0 14400 > th dose independent rect. 7 6
540 340.49 wind 7.0 14400 < th dose dependent rect. 14 2
552 340.55 temperature 25.0 720 < th dose dependent rect. 3 23
575 340.66 atmosphere 1005.0 4320 < th dose independent rect. 21 1
578 340.66 temperature 25.0 270 < th dose dependent rect. 24 11
623 340.84 humidity 70.0 1440 > th dose dependent rect. 10 9
641 340.96 humidity 80.0 1440 < th dose independent rect. 22 22
657 341.01 wind 3.0 43200 < th dose dependent rect. 4 2
668 341.05 radiation 1.0 4320 < th dose independent rect. 6 11
671 341.08 wind 5.0 14400 < th dose independent rect. 11 14
679 341.12 radiation 1.0 4320 > th dose independent rect. 6 11
681 341.13 atmosphere 1005.0 43200 > th dose independent rect. 3 1
713 341.27 atmosphere 995.0 14400 > th dose independent rect. 6 10
714 341.28 radiation 1.0 14400 < th dose independent rect. 7 1
728 341.34 atmosphere 995.0 14400 > th dose independent rect. 10 3
735 341.36 temperature 10.0 720 > th dose dependent rect. 21 12
746 341.41 wind 9.0 14400 > th dose independent rect. 5 6
747 341.41 wind 7.0 43200 > th dose dependent rect. 18 1
752 341.44 radiation 1.0 14400 < th dose dependent rect. 7 1
763 341.49 wind 5.0 14400 > th dose independent rect. 13 12
769 341.52 radiation 1.0 14400 < th dose dependent rect. 24 4
784 341.61 radiation 1.0 14400 > th dose independent rect. 7 1
799 341.65 wind 5.0 14400 < th dose independent rect. 13 12
841 341.84 humidity 70.0 1440 > th dose independent sin 15 NA
857 341.89 wind 5.0 14400 > th dose independent rect. 11 14
898 342.03 atmosphere 1005.0 43200 < th dose independent rect. 3 1
902 342.03 precipitation 0.1 14400 > th dose dependent rect. 5 5
926 342.13 humidity 80.0 1440 < th dose independent rect. 7 13
927 342.13 atmosphere 1005.0 270 > th dose dependent rect. 16 4
948 342.21 wind 5.0 14400 < th dose independent sin 20 NA
949 342.21 precipitation 0.1 14400 < th dose independent rect. 5 5
954 342.21 precipitation 0.1 14400 < th dose dependent rect. 5 5
968 342.25 atmosphere 1005.0 4320 < th dose dependent rect. 24 1